View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20582_high_30 (Length: 247)

Name: NF20582_high_30
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20582_high_30
NF20582_high_30
[»] chr2 (10 HSPs)
chr2 (1-234)||(5380893-5381125)
chr2 (1-234)||(36314071-36314304)
chr2 (47-234)||(1592634-1592821)
chr2 (48-231)||(25280426-25280611)
chr2 (1-200)||(19590451-19590650)
chr2 (70-180)||(41055503-41055613)
chr2 (47-155)||(12563532-12563640)
chr2 (72-180)||(21612994-21613102)
chr2 (72-180)||(21278949-21279057)
chr2 (1-38)||(10585948-10585985)
[»] chr8 (4 HSPs)
chr8 (1-234)||(2812348-2812580)
chr8 (1-234)||(18606346-18606578)
chr8 (115-234)||(26858485-26858604)
chr8 (108-180)||(35816398-35816470)
[»] chr4 (6 HSPs)
chr4 (1-234)||(31939972-31940204)
chr4 (1-234)||(13770084-13770316)
chr4 (1-234)||(19032541-19032773)
chr4 (1-234)||(32823280-32823512)
chr4 (54-234)||(24783133-24783311)
chr4 (72-180)||(30226288-30226396)
[»] chr7 (8 HSPs)
chr7 (1-234)||(2829780-2830012)
chr7 (1-234)||(304105-304337)
chr7 (1-234)||(45809451-45809692)
chr7 (47-143)||(33335345-33335440)
chr7 (72-180)||(41532752-41532860)
chr7 (70-155)||(31174195-31174280)
chr7 (72-180)||(5480879-5480987)
chr7 (143-201)||(33335626-33335684)
[»] chr6 (4 HSPs)
chr6 (1-234)||(30383757-30383983)
chr6 (1-234)||(582817-583049)
chr6 (1-234)||(3886468-3886700)
chr6 (1-218)||(7640048-7640264)
[»] chr1 (2 HSPs)
chr1 (4-234)||(7493755-7493988)
chr1 (48-137)||(33409622-33409711)
[»] chr5 (5 HSPs)
chr5 (47-234)||(17172443-17172628)
chr5 (1-234)||(8403750-8403982)
chr5 (72-180)||(12105996-12106104)
chr5 (106-180)||(21361245-21361319)
chr5 (1-39)||(39684641-39684679)
[»] chr3 (3 HSPs)
chr3 (1-234)||(35733964-35734194)
chr3 (1-127)||(40285896-40286022)
chr3 (72-180)||(52724945-52725053)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5380893 - 5381125
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||| | ||||||||| | ||||||||||||||||||||     
T  5380893 ttgtaccaaaaaagccacagtagaatagcggattgtaccaaaaaa-gctacaacaaaagaaataaaaactaatagtggctatttatgaaaattgaactcg 5380991  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||| ||||||||||| ||||||||||||    
T  5380992 tcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttgcaatgttcttttcaatgtagataaccaagttgtttgaaagaaaa 5381091  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||||||| ||||||||||    
T  5381092 tcatcactcattttgtttctttgttttgtcttga 5381125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36314071 - 36314304
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||| ||||||||||||| ||||||||| |        ||||||||||||||||| | ||||||| ||| || |||||||||||||||||     
T  36314071 ttgtaccaaaaaaaccacagtagaatagcggattgtatcaaaaaaaactacaacaaaagaaataaaaactaataatagctacttatgaaaattgaactcg 36314170  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||| ||| |||||| ||||||||||||||    
T  36314171 gcggcccttcaaagactcaaattcatccataattgcatcttagctaaatggacttgcaatgtctttttcaatgttaatgaccaagctatttgaaagaaaa 36314270  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||  ||| ||||||||||    
T  36314271 tcatcactcattttgttttattgttttgtcttga 36314304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 47 - 234
Target Start/End: Original strand, 1592634 - 1592821
Alignment:
Q  47 gctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagcta 146  Q
    |||||||||||||| ||| | ||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||    
T  1592634 gctacaacaaaagatataaaaactaataatagctacttatgaaaattgaactcggcggcccttcaaagactcaaattcatccataattgcatcttaacta 1592733  T
Q  147 aactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaatcatcactcattttgtttctttgctttgtcttga 234  Q
    ||  |||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  1592734 aatggacttgcaatgtctttttcaatgttaatgaccaagctatttgaaagaaaatcatcactcattttgtttcattgttttgtcttga 1592821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 25280611 - 25280426
Alignment:
Q  48 ctacaacaaaagaaatatatactaata--gtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagct 145  Q
    |||| |||||||||||| | |||||||  |||| ||||||| ||||||||||||  |  |||||||||||||||||||||||||||||||||||| || |    
T  25280611 ctaccacaaaagaaataaaaactaatatagtagctatttataaaaattgaactcgaccacccttcaaagactcaaattcatccataattgcatctcaggt 25280512  T
Q  146 aaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaatcatcactcattttgtttctttgctttgtct 231  Q
    |||| |||||||||| || ||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||  |||||||    
T  25280511 aaaccgacttgcaatgtccttttcaatgtaaataaccaagctacttgcaagaaaatcatcactcattttgtttctttattttgtct 25280426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 19590451 - 19590650
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||| |||||||| ||| |||||||| ||||||||||         ||| ||||||||||||| | ||||||||||  ||||||||||||||||||||     
T  19590451 ttgtatcaaaaaagtcacggtagaatagcggattgtacaaaaaaaaactataacaaaagaaataaaaactaatagtaactatttatgaaaattgaactcg 19590550  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
      | ||||||||| ||||||||||||||||| |||||||| ||||||| ||||||| ||| || |||||||||||||||||||   |||||| |||||||    
T  19590551 aagacccttcaaaaactcaaattcatccatagttgcatcttagctaaaatgacttgaaatgtccttttcaatgtaaataaccatactatttgcaagaaaa 19590650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 41055503 - 41055613
Alignment:
Q  70 taatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttc 169  Q
    ||||||||| ||||||||||| | ||||||| || || || |||||||||||||||||||||||||  | |||||||||||||| | |||| || |||||    
T  41055503 taatagtagctatttatgaaagtcgaactcaacgaccttttaaagactcaaattcatccataattgtctatgagctaaactgacatccaatgtccttttc 41055602  T
Q  170 aatgtaaataa 180  Q
    |||||||||||    
T  41055603 aatgtaaataa 41055613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 12563532 - 12563640
Alignment:
Q  47 gctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagcta 146  Q
    |||||||||||||||||| | ||||||||||| | |||||||||| ||||| ||     |||||||| |||||||||||| ||||||||||| |||||||    
T  12563532 gctacaacaaaagaaataaaaactaatagtagctgtttatgaaaactgaacccattaatccttcaaaaactcaaattcattcataattgcatttgagcta 12563631  T
Q  147 aactgactt 155  Q
    ||| |||||    
T  12563632 aaccgactt 12563640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 21612994 - 21613102
Alignment:
Q  72 atagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaa 171  Q
    ||||||| |||||| |||| | |||||  |||  |||||||||||||||||||||| |||| ||| | |||  | || ||||||||||| ||||||||||    
T  21612994 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttgcaatgtctttttcaa 21613093  T
Q  172 tgtaaataa 180  Q
    |||||||||    
T  21613094 tgtaaataa 21613102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 21279057 - 21278949
Alignment:
Q  72 atagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaa 171  Q
    ||||||| ||||||| ||| | ||||||  ||  |||||||| |||||||||||||||||| ||| | |||| | || ||||||||||| || |||| ||    
T  21279057 atagtagctatttataaaagtcgaactcgacgatccttcaaatactcaaattcatccataagtgcctatgagtttaagtgacttgcaatatcctttttaa 21278958  T
Q  172 tgtaaataa 180  Q
    | |||||||    
T  21278957 tataaataa 21278949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10585985 - 10585948
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtac 38  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  10585985 ttgtaccaaaaaaaccacaatagaataacggattgtac 10585948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2812580 - 2812348
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||| ||||||||||||| |||||| ||||        ||||||||||||||||| | | ||||||||| ||||||||||||||||||||     
T  2812580 ttgtaccaaaaaaaccacagtagaatagcggattataccaaaaaaa-ctacaacaaaagaaataaaaattaatagtagctatttatgaaaattgaactcg 2812482  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  2812481 gtggctcttcaaagactcaaattcatccataattgcatctgagttaaactgacttgcaatgtctttttcaatgtaaataaccaagctatttgaaagaaaa 2812382  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||||||| ||||||||||    
T  2812381 tcatcactcattttgtttctttgttttgtcttga 2812348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18606578 - 18606346
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||| ||||||||||||| ||||||||| |       |||||||||||||||||| | ||||||| ||| || |||||||||||||||||     
T  18606578 ttgtaccaaaaaaaccacagtagaatagcggattgtatcaaaaaa-gctacaacaaaagaaataaaaactaataatagctacttatgaaaattgaactcg 18606480  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||| ||| || ||| ||||||||||||||    
T  18606479 gcggtccttcaaagacccaaattcatccataattgcatcttagctaaatggacttgcaatgtctttttcaatgttaatgactaagctatttgaaagaaaa 18606380  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||| ||| ||||||||||    
T  18606379 tcatcactcattttgtttcattgttttgtcttga 18606346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 26858604 - 26858485
Alignment:
Q  115 actcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaatcatcactcatttt 214  Q
    ||||||||||||||||| |||| ||||||||||||||| |||||||  | |||||||||| |||||||||| |||||  | ||||||| |||||| ||||    
T  26858604 actcaaattcatccatatttgcctctgagctaaactgatttgcaatgaccttttcaatgtcaataaccaagctattttcatgaaaatcgtcactcgtttt 26858505  T
Q  215 gtttctttgctttgtcttga 234  Q
     |||||||  ||||||||||    
T  26858504 atttctttattttgtcttga 26858485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 35816398 - 35816470
Alignment:
Q  108 ttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataa 180  Q
    |||||||||||||| ||||  ||||| |  ||| || |||||||||||||||| ||||||||||| |||||||    
T  35816398 ttcaaagactcaaactcattgataatggtctctaagttaaactgacttgcaatatctttttcaatataaataa 35816470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31939972 - 31940204
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||| ||||||||||||||||||||| ||||||||||        |||||||||||||||||| | ||||||||||| ||||||||||||||||||||     
T  31939972 ttgtatcaaaaaagccacagtagaatagcggattgtac-aaaaaaagctacaacaaaagaaataaaaactaatagtagctatttatgaaaattgaactcg 31940070  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||  ||||||||||||||    
T  31940071 acgacccttcaaagactcaaattcatccataattgcatctgagctaaactgacttacaatgtctttttcaatgtaaataaccaaactatttgaaagaaaa 31940170  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    |||||||||||||||||| |||| ||||||||||    
T  31940171 tcatcactcattttgtttatttgttttgtcttga 31940204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 13770316 - 13770084
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||| | ||||||||||| ||||||||||||||||| ||     
T  13770316 ttgtaccaaaaaagccacagtagaatagcggattgtaccaaaaaa-gctacaacaaaagaaataaaaactaatagtagctatttatgaaaattgaattcg 13770218  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |  ||||||||||| ||||||||| | ||||||||||||    
T  13770217 tcggcccttcaaagactcaaattcatccataattgcatttgagctaaattgacttgcaatgttcttttcaatgtagataaccaagctgtttgaaagaaaa 13770118  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
     |||||||||||||||||||||| ||||||||||    
T  13770117 gcatcactcattttgtttctttgttttgtcttga 13770084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 19032541 - 19032773
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||||||||| ||||||| || ||||||||        ||||||||||||||||| | ||||||||||| ||| |||||||||||||||||    
T  19032541 ttgtaccaaaaaagccacaatagaatagcgaattgtaccaaaaaat-ctacaacaaaagaaataaaaactaatagtagctatatatgaaaattgaactca 19032639  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |||||| |||||||    
T  19032640 gcgacccttcaaacactcaaattcatccataattgcatctgagctaaactgacttgcaatttccttttcaatgtaaataatcaagctatttgcaagaaaa 19032739  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    |||||  |||||||||||||||| ||||||||||    
T  19032740 tcatctatcattttgtttctttgttttgtcttga 19032773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32823280 - 32823512
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||||||||||||||||| |||||||||||       ||| |||||||||||||| | ||||||||||| ||||||||| |||| |||||     
T  32823280 ttgtaccaaaaaagccacagtagaatagcggattgtaccaaaaaa-gctccaacaaaagaaataaaaactaatagtagctatttatgataattaaactcg 32823378  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    |||||| || ||||||| |||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  32823379 gcggccttttaaagactaaaattcatccataattgcatatgaggtaatctgacttgcaatgtctttttcaatgtaaataaccaagctatttgaaagaaaa 32823478  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||  ||||||||||||||||  ||||||||||    
T  32823479 tcattgctcattttgtttctttattttgtcttga 32823512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 24783133 - 24783311
Alignment:
Q  54 caaaagaaatatatactaatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgac 153  Q
    ||||||||| | | ||||||||||| ||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||  |||||||||||||    
T  24783133 caaaagaaacaaaaactaatagtagctatttatgaaaatcgaactcggcgaccattcaaagactcaaattcatccataattgcat--gagctaaactgac 24783230  T
Q  154 ttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaatcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||| || |||| ||||| |||||||||| |||||| |||||||| ||||||||||||| ||||||| ||| ||||||    
T  24783231 ttgcaatgtcctttttaatgtgaataaccaagatatttgcaagaaaataatcactcattttgattctttgttttatcttga 24783311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 30226288 - 30226396
Alignment:
Q  72 atagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaa 171  Q
    ||||||| |||||| |||| | |||||  |||  |||||||||||||||||||||| |||| ||| | |||  | || ||||||||||| ||||||||||    
T  30226288 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttgcaatgtctttttcaa 30226387  T
Q  172 tgtaaataa 180  Q
    |||||||||    
T  30226388 tgtaaataa 30226396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2830012 - 2829780
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||||||||| ||||||| |||||||||||       |||||||||||||||||| | ||||||||||| ||||| | |||| |||||||     
T  2830012 ttgtaccaaaaaagccacaatagaatagcggattgtaccaaaaaa-gctacaacaaaagaaataaaaactaatagtagctattttttaaaaatgaactcg 2829914  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| || ||||||||| | ||||||||||||    
T  2829913 tcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttgcaatgtccttttcaatatagataaccaagctgtttgaaagaaaa 2829814  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||||||| ||||||||||    
T  2829813 tcatcactcattttgtttctttgttttgtcttga 2829780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 304105 - 304337
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    |||||||||||||| |||||||||||| |||||||||||       |||||||||||||||||| | ||||||||||| ||||| | |||| |||||||     
T  304105 ttgtaccaaaaaagtcacagtagaatagcggattgtaccaaaaaa-gctacaacaaaagaaataaaaactaatagtagctattttttaaaaatgaactcg 304203  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||| || ||||||||| | ||||||||||||    
T  304204 tcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttacaatgtccttttcaatatagataaccaagctgtttgaaagaaaa 304303  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||||||| ||||||||||    
T  304304 tcatcactcattttgtttctttgttttgtcttga 304337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45809451 - 45809692
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    |||||||||||||| |||||||||| |||||||||||||       |||||||||||||||||| | ||||||||||| ||||||||||||||||||||     
T  45809451 ttgtaccaaaaaagacacagtagaaaaacggattgtaccaaaaaa-gctacaacaaaagaaataaaaactaatagtagctatttatgaaaattgaactcg 45809549  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaa----------tctctttttcaatgtaaataaccaagttatt 190  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||          | | ||||| |||||||||||||||| ||||    
T  45809550 gcggcccttcaaagactcaaattcatccataattgcgt-tgagctaaactgacctgcaatactttttttttttttttttaatgtaaataaccaagctatt 45809648  T
Q  191 tgaaagaaaatcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  45809649 tgaaagaaaatcatcgctcattttgtttctttgttttgtcttga 45809692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 33335345 - 33335440
Alignment:
Q  47 gctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgag 143  Q
    |||||||||| | ||||| | ||||||||||| |||||||||||||||||||| ||| ||||| ||||||||  ||||||| |||||||||| ||||    
T  33335345 gctacaacaatataaataaaaactaatagtagctatttatgaaaattgaactcggcgacccttgaaagactc-gattcatctataattgcatatgag 33335440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 41532860 - 41532752
Alignment:
Q  72 atagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaa 171  Q
    ||||||| |||||| |||| | |||||  |||  |||||||||||||||||||||| |||| ||| | |||  | || ||||||||||| ||||||||||    
T  41532860 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttgcaatgtctttttcaa 41532761  T
Q  172 tgtaaataa 180  Q
    |||||||||    
T  41532760 tgtaaataa 41532752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 31174195 - 31174280
Alignment:
Q  70 taatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgactt 155  Q
    ||||||||||||||||||||| | ||||||  ||  | |||||||||||||||||||| |||||||  | ||| ||||||||||||    
T  31174195 taatagtagttatttatgaaagtcgaactcgacgatctttcaaagactcaaattcatcgataattgtctatgatctaaactgactt 31174280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 5480987 - 5480879
Alignment:
Q  72 atagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaa 171  Q
    ||||||| ||||||||||| | ||||||  |   |||| |||||||||||||||||||||| ||| | | || | || ||||||||||| |  |||||||    
T  5480987 atagtagctatttatgaaagtcgaactcgacaatccttgaaagactcaaattcatccataactgcctataagtttaagtgacttgcaatgttcttttcaa 5480888  T
Q  172 tgtaaataa 180  Q
    |||||||||    
T  5480887 tgtaaataa 5480879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 33335626 - 33335684
Alignment:
Q  143 gctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaat 201  Q
    |||||| ||||||||||| || |||||||||||||||||| |  |||||| ||||||||    
T  33335626 gctaaattgacttgcaatatccttttcaatgtaaataacctaactatttgcaagaaaat 33335684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30383757 - 30383983
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||||||||| ||||||| |||||||||||       |||||||||||||||||      ||||||||| ||||||||||||||||||||     
T  30383757 ttgtaccaaaaaagccacaatagaatagcggattgtaccaaaaaa-gctacaacaaaagaaat------taatagtagctatttatgaaaattgaactcg 30383849  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||| ||| ||||||||| | ||||||||||||    
T  30383850 tcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttgcaatgttcttttcaacgtagataaccaagctgtttgaaagaaaa 30383949  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||||||| ||||||||||    
T  30383950 tcatcactcattttgtttctttgttttgtcttga 30383983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 582817 - 583049
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||| ||||||| ||||||||||||| ||||||||| |       |||||||||||||||||| | ||||||| ||| || |||||||||||||||||     
T  582817 ttgtatcaaaaaaaccacagtagaatagcggattgtatcaaaaaa-gctacaacaaaagaaataaaaactaataatagctacttatgaaaattgaactcg 582915  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||   ||||||||| ||||||||||||| ||| |||||| ||||||||||||||    
T  582916 gctgcccttcaaagactcaaattcatccataattgcatcttagctaaatgaacttgcaatgtctttttcaatgttaatgaccaagctatttgaaagaaaa 583015  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    ||||||||||||||||||| ||| ||||||||||    
T  583016 tcatcactcattttgtttcattgttttgtcttga 583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3886700 - 3886468
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||| ||||||||||||| ||||||||| |       |||||||||||||||||| | | ||||| ||  || || ||||||||||||||     
T  3886700 ttgtaccaaaaaaaccacagtagaatagcggattgtatcaaaaaa-gctacaacaaaagaaataaaaattaataataactacttgtgaaaattgaactcg 3886602  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||| ||| || ||| ||||||||||||||    
T  3886601 gcggcccgtcaaagactcaaattcatccataattgcatcttagctaaatggacttgcaatgtctttttcaatgttaatgactaagctatttgaaagaaaa 3886502  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    |||||||||||||| |||| ||| ||||||||||    
T  3886501 tcatcactcattttatttcattgttttgtcttga 3886468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7640264 - 7640048
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaata--gtagttatttatgaaaattgaact 98  Q
    ||||||||||||| ||||||||||||| ||||||||||         ||||||||||||||||| | |||||||  |||| ||||| |||||||||||||    
T  7640264 ttgtaccaaaaaa-ccacagtagaatagcggattgtacaaaaaaa--ctacaacaaaagaaataaaaactaatatagtagctatttgtgaaaattgaact 7640168  T
Q  99 cagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaa 198  Q
    |  || || |||||| |||||||||||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||||| ||||||| | |||    
T  7640167 cgacgacctttcaaaaactcaaattcatccataattgcatctgagctaagttgacttgcaatgtccttttcaatgtaaataaccaaattatttgcatgaa 7640068  T
Q  199 aatcatcactcattttgttt 218  Q
    ||||||||||||||||||||    
T  7640067 aatcatcactcattttgttt 7640048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 7493988 - 7493755
Alignment:
Q  4 taccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactcagcg 103  Q
    ||||||||||| ||| |||||| |||||||||||||       |||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||     
T  7493988 taccaaaaaagacaccgtagaaaaacggattgtaccaaaaaa-gctacaacaaaagaaataaaaactaatagtagctatttatgaaaattgaactcggca 7493890  T
Q  104 gcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgca----atctctttttcaatgtaaataaccaagttatttgaaagaaa 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    || | ||||| |||||||||||||||| |||||||||||||    
T  7493889 gcccttcaaagactcaaatttatccataattgcatctgagctaaactgacctgcaatatatattttttttaatgtaaataaccaagctatttgaaagaaa 7493790  T
Q  200 atcatcactcattttgtttctttgctttgtcttga 234  Q
    |||||| ||||||||||||||||| ||||||||||    
T  7493789 atcatcgctcattttgtttctttgttttgtcttga 7493755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 33409622 - 33409711
Alignment:
Q  48 ctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgca 137  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||| || ||| | || |||||||| ||||||||||||||||||    
T  33409622 ctacaacaaaagaaataaaaactaatagtagctatttatgaaaattgaacccaacggtcttttaaagactcgaattcatccataattgca 33409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 17172628 - 17172443
Alignment:
Q  47 gctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagcta 146  Q
    |||||||||||||||||| | ||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||    
T  17172628 gctacaacaaaagaaataaaaactaatagtggctatttatgaaaattgaactcgacggcccttcaaagactcaaattcatccataattgcatctgaccta 17172529  T
Q  147 aactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaatcatcactcattttgtttctttgctttgtcttga 234  Q
    |||  | ||||| | || ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  17172528 aac--atttgcattgtccttttcgatgttaataaccaagctatttgaaagaaaatcatcactcattttgtttctttattttgtcttga 17172443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 8403982 - 8403750
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    |||||| |||| ||||||| ||||||| |||||||||||        ||| ||||||||||||| | | ||||||||| ||||||||||||||||||||     
T  8403982 ttgtacaaaaagagccacaatagaatagcggattgtaccaaaagaa-ctataacaaaagaaataaaaattaatagtagctatttatgaaaattgaactcg 8403884  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||| |||||||  |||||| |||||||    
T  8403883 gcgacccttcaaagactcaaattcatccataattgcatcagagataaactgacttgcaatgttcttttcaatgtaagtaaccaaactatttgcaagaaaa 8403784  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    |||||  |||||||||||||||| ||| ||||||    
T  8403783 tcatctatcattttgtttctttgttttatcttga 8403750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 12106104 - 12105996
Alignment:
Q  72 atagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaa 171  Q
    ||||||| |||||| |||| | |||||| |||  |||||||||||||||||||||| |||| ||| | |||| | |  ||||||||||| ||||||||||    
T  12106104 atagtagctatttacgaaagtcgaactcggcgatccttcaaagactcaaattcatctataactgcttatgagtttatgtgacttgcaatgtctttttcaa 12106005  T
Q  172 tgtaaataa 180  Q
    |||||||||    
T  12106004 tgtaaataa 12105996  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 21361319 - 21361245
Alignment:
Q  106 ccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataa 180  Q
    |||||||||||||||||||||| |||| ||| | |||  | || |||||| |||| |||||||||||||||||||    
T  21361319 ccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttacaatgtctttttcaatgtaaataa 21361245  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39684641 - 39684679
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtacc 39  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  39684641 ttgtaccaaaaaagccacagtagaatagcggattgtacc 39684679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 35733964 - 35734194
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||||||||||||| |||||| |||| ||| |||||||       ||||||| |||||||||| | ||||| ||||| |  |||| ||||||||||||     
T  35733964 ttgtaccaaaaaagctacagtaaaatagcgggttgtaccaaaaaa-gctacaataaaagaaataaaaactaacagtagctgcttataaaaattgaactcg 35734062  T
Q  101 gcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaatgtaaataaccaagttatttgaaagaaaa 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||| ||||||||| ||||    
T  35734063 gcggcccttcaaagactcaaattcattcataattgcatctgagctaaattgacttgcaatgtccttttcaatgtagataaccaagctatttgaaa-aaaa 35734161  T
Q  201 tcatcactcattttgtttctttgctttgtcttga 234  Q
    | ||||||||||||||||||||  ||||||||||    
T  35734162 t-atcactcattttgtttctttcttttgtcttga 35734194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 40286022 - 40285896
Alignment:
Q  1 ttgtaccaaaaaagccacagtagaataacggattgtaccnnnnnnngctacaacaaaagaaatatatactaatagtagttatttatgaaaattgaactca 100  Q
    ||||| |||||||||||| |||||||| ||||||||||        |||||||||||||||||| | ||||||||||| ||||||||||||||||||||     
T  40286022 ttgtatcaaaaaagccacggtagaatagcggattgtacaaaaaaaagctacaacaaaagaaataaaaactaatagtagctatttatgaaaattgaactcg 40285923  T
Q  101 gcggcccttcaaagactcaaattcatc 127  Q
      || | |||||| |||||||||||||    
T  40285922 atggactttcaaaaactcaaattcatc 40285896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 52725053 - 52724945
Alignment:
Q  72 atagtagttatttatgaaaattgaactcagcggcccttcaaagactcaaattcatccataattgcatctgagctaaactgacttgcaatctctttttcaa 171  Q
    ||||||| |||||| |||| | |||||  |||  |||||||||||||||||||||| |||| ||| | |||  | || ||||||||||| ||||||||||    
T  52725053 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataaatgcttatgaatttaagtgacttgcaatgtctttttcaa 52724954  T
Q  172 tgtaaataa 180  Q
    |||||||||    
T  52724953 tgtaaataa 52724945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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