View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20582_low_11 (Length: 424)
Name: NF20582_low_11
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 7832128 - 7832415
Alignment:
| Q |
11 |
cagagaccaatctttttgaaactatttcaaacataggaaccttttattccttcaaaagtaatacaaatcccttactctgaaaagggaacccaaacttcac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7832128 |
cagagaccaatctttttgaaactatttcaaacataggaaccttttattccttcaaaagtaatacaaatcccttagtctgaaaagggaacccaaacttcac |
7832227 |
T |
|
| Q |
111 |
actctcttgtcccaacattatcaaaccgaacaaagggaggttttggggaagcatctccataacatacaaaggttattcccaaaggctcctcggcaaccca |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
7832228 |
actctcttgtcccaacattatcaatccgaacaaagggaggttttggggaagca----------------------ttctcaaaggctcctcggcaaccca |
7832305 |
T |
|
| Q |
211 |
aaaacacacccatctctcgctaggaggagcaatattcaaattcctagtactattctttcttatatcacctgaaaagtggggaatgataaatgagttcgac |
310 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7832306 |
aaaacgcacccatctcttgctaggaggagcaatattcaaattcctagtactcttctttcttatatcacctgaaaagtggggaatgataaatgagttcgac |
7832405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 7832449 - 7832505
Alignment:
| Q |
319 |
catataaagtcaaaagataaaaagtagcattgttgcgataaacgtagaaatcaaggc |
375 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7832449 |
cataaaaagtcaaaagataaaaagtagctttgttgcgataaacgtagaaatcaaggc |
7832505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Original strand, 7832530 - 7832559
Alignment:
| Q |
376 |
tgcaccatataaaagtccaagagagattct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7832530 |
tgcaccatataaaagtccaagagagattct |
7832559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University