View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_12 (Length: 408)
Name: NF20582_low_12
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 45666306 - 45666696
Alignment:
| Q |
18 |
ttgttatcatcaacttggtttatggtcaacaacatcacttcttcaatgaaaccgaagaactctttctgttagaggctcatgaacatgcaacatcctttct |
117 |
Q |
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| T |
45666306 |
ttgttatcatcaacttggtttatggtcaacaacatcacttcttcaatgaaactgaagaactctttctgttagaggctcatgaacatgcagcatcctttct |
45666405 |
T |
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| Q |
118 |
tgaggagggtaatggaaatcctcttctcgtaggattcacccttatccacaatgcagctgctaaaggagcaggtactatactagtactagtactacctaca |
217 |
Q |
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| T |
45666406 |
tgaggagggtaatggaaatcctcttctcgtaggactcacccttgttcacaatgcagctgctaaaggagcaggtactatactagtactagtactacctaca |
45666505 |
T |
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| Q |
218 |
aacaatacagcacctttctcctcctttcctctctaacattaaata-ttttttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgca |
316 |
Q |
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| T |
45666506 |
aacaatacagcacctttctcctcctttcctctc-aacattaaatatttttttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgca |
45666604 |
T |
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| Q |
317 |
ccgtggatatggatcaggagcagactgttggcttgttaatttagaggtatttctacaccaaataatagtattaaggttgacgagtctttctt |
408 |
Q |
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| T |
45666605 |
ccgtggatatggatcaggagcagacagttggcttgttaatttagaggtatttctacaccaaataatagtattaaggttgacgagtctttctt |
45666696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 37973790 - 37973690
Alignment:
| Q |
266 |
tttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagactgttggcttgttaatttagaggta |
365 |
Q |
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| T |
37973790 |
tttgtttttggcagtctgcttggatggaacattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggta |
37973691 |
T |
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| Q |
366 |
t |
366 |
Q |
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| T |
37973690 |
t |
37973690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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