View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_13 (Length: 378)
Name: NF20582_low_13
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 53566996 - 53567357
Alignment:
| Q |
1 |
acaaaataatttaccttgaatcagattagttgaatagcaatcttgggaaaatatgttactattgggataagccacacaccaaaaattgaaaatcataata |
100 |
Q |
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| T |
53566996 |
acaaaataatttaccttgaatcagattagttgaatagcaatcttgggaaaatatgttactattgggataagccacacaccaaaaattgaaaatcataata |
53567095 |
T |
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| Q |
101 |
catcacatataaaagattaatagtttgtctctataaatttaactcggttgatagagacattacaaaatatatgtatggcttgtactccaacattccactt |
200 |
Q |
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| T |
53567096 |
catcacatataaaagattaatagtttgtctctataaatttaactcggttgacagagacattacaaaatatatgtatggcttgtactccaacattccactt |
53567195 |
T |
|
| Q |
201 |
attcaccttaaaaggtgggccagttgcgcacagatacattggatggtcaacaaccactgcaatgtaaaatatgatttcatccattaagtctatgtttgga |
300 |
Q |
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| T |
53567196 |
attcaccttaaaaggtgggccagttgcgcgcagatacattggatggtcaacaaccactgcaatgtaaaatatgatttcatccattaagtctatgtttgga |
53567295 |
T |
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| Q |
301 |
tacccggtggaaacaatcaaacgtacgtccttcccatgaaacgcgatttcaatatgtttggt |
362 |
Q |
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| T |
53567296 |
tacccggtggaaacaatcaaacgtacgtccttcccatgaaacgcgatttcaatatgtttggt |
53567357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 37149321 - 37149287
Alignment:
| Q |
287 |
agtctatgtttggatacccggtggaaacaatcaaa |
321 |
Q |
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| T |
37149321 |
agtctgtgtttggatacccggtggaaacaatcaaa |
37149287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 37532536 - 37532502
Alignment:
| Q |
287 |
agtctatgtttggatacccggtggaaacaatcaaa |
321 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
37532536 |
agtctgtgtttggatacccggtggaaacaatcaaa |
37532502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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