View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_15 (Length: 360)
Name: NF20582_low_15
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 44992284 - 44992624
Alignment:
| Q |
1 |
atgtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatca |
100 |
Q |
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| T |
44992284 |
atgtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctgttgtttaaaatcatca |
44992383 |
T |
|
| Q |
101 |
gaatcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaatctggattactgctgttgttgtattaaacagcacaataagtaaaataannn |
200 |
Q |
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| T |
44992384 |
gaatcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaatctggattactgctgttgttgtattaaacagcacaataagtaaaat-agtt |
44992482 |
T |
|
| Q |
201 |
nnnnnnnnnnnnccatttgtaaagtatcataaattgcaagttctgtttgcatgctgctgaaaacttcaaaactcatcaaattaaccatcaatatcagcaa |
300 |
Q |
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| T |
44992483 |
ttttttttttttccttttgtaaagtatcataaattgcaagttctgtttgcgtgctgctgaaaacttcaaaactcatcaaattaaccatctatatcagcaa |
44992582 |
T |
|
| Q |
301 |
agagtctattaaataattacatcaagtcttaagtcttacttg |
342 |
Q |
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| T |
44992583 |
agagtctattaaataattacatcaagtcttaagtcttacttg |
44992624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 44978906 - 44979053
Alignment:
| Q |
1 |
atgtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatca |
100 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||| |
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| T |
44978906 |
atgtacctgctgaagtttcgttgctattttctgatacatctcattgagctccggcaagtagctctctttcataactttgatctattg-ttaaaatcatca |
44979004 |
T |
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| Q |
101 |
gaatcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaat |
150 |
Q |
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| T |
44979005 |
gaatc-aataaagaatgtgttagaaaccatgaaatatgtcacacaagaat |
44979053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 44980719 - 44980865
Alignment:
| Q |
3 |
gtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatcaga |
102 |
Q |
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|||||||||||||||| ||||||||||||||| |||| | | |||| |||||||||||||||||||||||||| |||||||||| || ||||||| | |
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| T |
44980719 |
gtacctgctgaagtttcgttgcaattttctgaatcatctcactaagctttggcaagtagctctctttcatagctttgatctattgttaaa-atcatcata |
44980817 |
T |
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| Q |
103 |
atcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaat |
150 |
Q |
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| T |
44980818 |
atcaaataaagaacgttttagaaaccatgaaatatctcatgcaagaat |
44980865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 44964748 - 44964878
Alignment:
| Q |
4 |
tacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatcagaa |
103 |
Q |
| |
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|||||| |||||||| ||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||| |||| |||||| || |
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| T |
44964748 |
tacctgatgaagtttcgttgcgattttctgatacatctcgctaagctctggcaagtagctctctttcatagctttgatctatt-attaaaatcatccaaa |
44964846 |
T |
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| Q |
104 |
tcaaataaagaatgtgttagaaaccattaaat |
135 |
Q |
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||| |||| |||||||||||||||||| |||| |
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| T |
44964847 |
tcatataaggaatgtgttagaaaccataaaat |
44964878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 44979916 - 44979969
Alignment:
| Q |
284 |
accatcaatatcagcaaagagtctattaaataattacatcaagtcttaagtctt |
337 |
Q |
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|||||| |||||||||||||||| |||||||||||||| ||||||| ||||||| |
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| T |
44979916 |
accatctatatcagcaaagagtcaattaaataattacaacaagtctgaagtctt |
44979969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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