View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20582_low_17 (Length: 352)
Name: NF20582_low_17
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 53566949 - 53566623
Alignment:
| Q |
21 |
aataatccaagagggacaaaatagaccgtataaaggaataaagctcttgcagcacgaaattttttctttcacacaactcaaactggagaccttaatggga |
120 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53566949 |
aataatccaagatgaacaaaatagaccgtataaaggaataaagctcttgcagcacgaaattttttctttcacacaactcaaactggagaccttaatggga |
53566850 |
T |
|
| Q |
121 |
accaaactccttataccacatgtgttggcaatattgattattaccaagaattaaaatgcattcaat--nnnnnnnnnntgtaatatattaagaaagatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53566849 |
accaaactccttataccacatgtgttggcaatattgattattaccaagaattaaaatgcattcaataaaaaaaaaaaatgtaatatattaagaaagatca |
53566750 |
T |
|
| Q |
219 |
acgaaagaaagtgtaattaagaaacgagtacctaactaactttttcttgtaggcgccacatattcttgcttaaacttatcttatgataagagtgttcttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53566749 |
acgaaagaaagtgtaattaagaaacgagtacctaactaactttttcttgtaggcgccacatattcttgcttaaacttatcttatgataagagtgttcttt |
53566650 |
T |
|
| Q |
319 |
ttggattcatatgagtaataatattct |
345 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53566649 |
ttggattcatatgagtaataatattct |
53566623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University