View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_18 (Length: 340)
Name: NF20582_low_18
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 7377977 - 7378093
Alignment:
| Q |
1 |
aagaaaaatctaaagcctaaaacctttatgtatataatggaacctgcagcagttaactcttacacactaaggaaaccgagtttcccaccaaaatgaagtt |
100 |
Q |
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| T |
7377977 |
aagaaaaatctaaagcctaaaacctttatgtatataatggaacctgcagcagttaactcttacacactaaggaaactgagtttcccaccaaaatgaagtt |
7378076 |
T |
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| Q |
101 |
tctttacacaaattgat |
117 |
Q |
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| T |
7378077 |
tctctacacaaattgat |
7378093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 7378141 - 7378293
Alignment:
| Q |
165 |
gaatgtttaatgtctaattaaatggttgatggttatacttacctcacggttaacaccagcagnnnnnnnnnnngttgttaaaatgtaatttcgtgccaat |
264 |
Q |
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| T |
7378141 |
gaatgtttaatgtctaattaaatggttgatagttatacttacctcacggttaacaccaacaattatttttt---ttgttaaaatgtaatttcgtgccaat |
7378237 |
T |
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| Q |
265 |
tataaaagcaacaaaaaatgaagttagatttagtcaggtaaacaaatagtaagaac |
320 |
Q |
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| T |
7378238 |
tataaaagcaacaaaaaatgaagttagatttagtcaggtaaacaaatagtaagaac |
7378293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 7372212 - 7372253
Alignment:
| Q |
7 |
aatctaaagcctaaaacctttatgtatataatggaacctgca |
48 |
Q |
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| T |
7372212 |
aatctaaagcctaagacctttatgtctatcatggaacctgca |
7372253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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