View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20582_low_19 (Length: 340)

Name: NF20582_low_19
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20582_low_19
NF20582_low_19
[»] chr6 (6 HSPs)
chr6 (7-321)||(5914941-5915255)
chr6 (255-321)||(5924285-5924350)
chr6 (136-213)||(17008361-17008438)
chr6 (36-95)||(5924228-5924287)
chr6 (136-213)||(33603688-33603765)
chr6 (13-53)||(5923778-5923818)
[»] chr8 (3 HSPs)
chr8 (136-257)||(24574555-24574676)
chr8 (136-234)||(27519151-27519249)
chr8 (154-213)||(1770446-1770505)
[»] chr5 (2 HSPs)
chr5 (103-185)||(1296587-1296669)
chr5 (136-234)||(4574792-4574890)
[»] chr1 (2 HSPs)
chr1 (136-255)||(2534711-2534830)
chr1 (136-213)||(29426694-29426771)
[»] chr7 (2 HSPs)
chr7 (136-257)||(5654250-5654371)
chr7 (136-255)||(31219320-31219439)
[»] chr2 (3 HSPs)
chr2 (136-215)||(5279237-5279316)
chr2 (136-213)||(202329-202406)
chr2 (103-197)||(8587103-8587196)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 5914941 - 5915255
Alignment:
Q  7 tcgaagaatattacggttatgattgattgacaatgtaaaatatgtttacgctacaaatgcgtgccaattgaatccatgttctcaattaagtacccatttg 106  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  5914941 tcgaataatatcacggttataattgattgacaatgtaaaatatgtttacgctacaaatgcctgtcaattgaatccatgttctcaattaagtacccatttg 5915040  T
Q  107 aaatcacggtgaaaaccacacccaccgttgttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagt 206  Q
    |||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5915041 aaatcacggtgaaaaccacatccaccattgttttggctaacgttccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagt 5915140  T
Q  207 gcattgggacgcagtttccagcttccaaccgcgtttcaaaacacacactaaattgacttgtgaaataatttgatattcatattttttatgtctataatgt 306  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5915141 gcattgggacgcagtttccagcttccaactgcgtttcaaaacacacactaaattgacttgtgaaataatttgatattcatattttttatgtctataatgt 5915240  T
Q  307 tgtaggtgtgatgca 321  Q
    |||||||||||||||    
T  5915241 tgtaggtgtgatgca 5915255  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 5924285 - 5924350
Alignment:
Q  255 taaattgacttgtgaaataatttgatattcatattttttatgtctataatgttgtaggtgtgatgca 321  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5924285 taaattgacttgtgaaataatttgatattcata-tttttatgtctataatgttgtaggtgtgatgca 5924350  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 17008438 - 17008361
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 213  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||    |||||||||||||||    
T  17008438 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaagtgtgaatagtgcattgg 17008361  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 5924228 - 5924287
Alignment:
Q  36 acaatgtaaaatatgtttacgctacaaatgcgtgccaattgaatccatgttctcaattaa 95  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||    
T  5924228 acaatgtaaaatatgtttacgctgcaaatacgtgccaattaaatccatgttgtcaattaa 5924287  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 33603765 - 33603688
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 213  Q
    |||||||| || ||||||||||||||||||||| |||||| |||||||| ||||||| |    |||||||||||||||    
T  33603765 gttttggctaaagctccaaattggagcttctaccttttcatattttttatgcattggaaagtgtgaatagtgcattgg 33603688  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 5923778 - 5923818
Alignment:
Q  13 aatattacggttatgattgattgacaatgtaaaatatgttt 53  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  5923778 aatataacggttatgactgattaacaatgtaaaatatgttt 5923818  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 24574676 - 24574555
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 235  Q
    |||||||| || ||||||||||| ||||||||||||||||| |||||||||||| || |  | |||||||||||||| || |||||||| |||||||||     
T  24574676 gttttggctaatgctccaaattgaagcttctactttttcacgttttttaagcatcggaaatcgtgaatagtgcattgtgaagcagtttctagcttccaaa 24574577  T
Q  236 cgcgtttcaaaacacacactaa 257  Q
    ||| || | |||||||||||||    
T  24574576 cgctttcccaaacacacactaa 24574555  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 27519151 - 27519249
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaa 234  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||| |  ||||||||||||||||| |  ||||| |||||||||    
T  27519151 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaaatgtgaatagtgcattgggaagtggtttctagcttccaa 27519249  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 1770446 - 1770505
Alignment:
Q  154 aattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 213  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| | ||||||||||||||||    
T  1770446 aattggagcttctaccttttcacgttttttatgcattgggaaatatgaatagtgcattgg 1770505  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 1296587 - 1296669
Alignment:
Q  103 tttgaaatcacggtgaaaaccacacccaccgttgttttggccaacgctccaaattggagcttctactttttcacattttttaa 185  Q
    |||| ||||| ||||||||||||| |||||| | ||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  1296587 tttggaatcagggtgaaaaccacaaccaccgcttttttggccaacgctctaaattgaagcttctactttttcatattttttaa 1296669  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 4574792 - 4574890
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaa 234  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||    ||||||||||||||| | |  ||||| |||||||||    
T  4574792 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaagtgtgaatagtgcattggaaagttgtttctagcttccaa 4574890  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 255
Target Start/End: Original strand, 2534711 - 2534830
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 235  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||    ||||||||||||||||| |  ||||  |||||||||     
T  2534711 gttttggctaaagctccaaattggagcttttactttttcacattttttatgcattgggaagtgtgaatagtgcattgggaagtggtttatagcttccaaa 2534810  T
Q  236 cgcgtttcaaaacacacact 255  Q
     || || | |||||||||||    
T  2534811 agccttcccaaacacacact 2534830  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 29426771 - 29426694
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 213  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||    |||||||||||||||    
T  29426771 gttttggctaaagctccaaattggagcttctactttttcacgttttttatgcattgggaagtgtgaatagtgcattgg 29426694  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 5654371 - 5654250
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 235  Q
    |||||||| || | ||||||||||||||||||||||||||  ||||||| |||||||||    ||||||||||||||||| |  ||||| |||||||||     
T  5654371 gttttggctaaagttccaaattggagcttctactttttcatgttttttatgcattgggaagtgtgaatagtgcattgggaagtggtttctagcttccaaa 5654272  T
Q  236 cgcgtttcaaaacacacactaa 257  Q
     || || | |||||||||||||    
T  5654271 agccttcccaaacacacactaa 5654250  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 255
Target Start/End: Original strand, 31219320 - 31219439
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgggacgcagtttccagcttccaac 235  Q
    |||||||| || |||||||||| |||||||||||||||||  ||||||| |||||||||    ||||||||||||||||| |  ||||| |||||||||     
T  31219320 gttttggctaaagctccaaattagagcttctactttttcatgttttttatgcattgggaagtgtgaatagtgcattgggaagtggtttctagcttccaaa 31219419  T
Q  236 cgcgtttcaaaacacacact 255  Q
     || || | |||||||||||    
T  31219420 agccttcccaaacacacact 31219439  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 5279316 - 5279237
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattggga 215  Q
    |||||||| || |||| |||||||||||||||||||||||  ||||||| |||||||||    |||||||||||||||||    
T  5279316 gttttggctaaagctctaaattggagcttctactttttcatgttttttatgcattgggaagtgtgaatagtgcattggga 5279237  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 202406 - 202329
Alignment:
Q  136 gttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacacatgaatagtgcattgg 213  Q
    |||||||| || ||||||||||||||||||||||||||||  ||||||| ||||||| |    |||||||||||||||    
T  202406 gttttggctaaagctccaaattggagcttctactttttcatgttttttatgcattggaaagtgtgaatagtgcattgg 202329  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 8587103 - 8587196
Alignment:
Q  103 tttgaaatcacggtgaaaaccacacccaccgttgttttggccaacgctccaaattggagcttctactttttcacattttttaagcattgggacac 197  Q
    |||| ||||||  |||| |||||||||||||||  |||||| || | |||||||| |||||||||| ||||||  ||||||||| || |||||||    
T  8587103 tttggaatcacaatgaataccacacccaccgtt-atttggctaatgttccaaattagagcttctacgttttcaagttttttaagaatcgggacac 8587196  T

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