View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_2 (Length: 630)
Name: NF20582_low_2
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_2 |
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| [»] scaffold0011 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 14 - 616
Target Start/End: Original strand, 241874 - 242476
Alignment:
| Q |
14 |
agggtgttatgaaaaaagtgcttctatcatacacatatgtagccatatggattttcttaagtttttcagtaattgtctacaacaaatacatcctagacca |
113 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
241874 |
agggtgtgatgaaaaaagtgcttctatcatacacatatgtagccatatggattttcttaagtttctcagtaattgtctacaacaaatacatcctagacca |
241973 |
T |
|
| Q |
114 |
aaaaatgtacaattggccattcccaatatcactaacaatgatccacatggccttttgttcctcccttgcttacatccttgtaaacatcttcaaagtagtg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
241974 |
aaaaatgtacaattggccattcccaatatcactaacaatgatccacatggccttttgttcctcccttgcttacatccttgtaaacatcttcaaagtagtt |
242073 |
T |
|
| Q |
214 |
gacccaatttcaatgtctttagacacataccttaaatcagtggtccctattggtgcactttactctctttccctttggttctcaaactctgcttacattt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242074 |
gacccaatttcaatgtctttagacacataccttaaatcagtggtccctattggtgcactttactctctttccctttggttctcaaactctgcttacattt |
242173 |
T |
|
| Q |
314 |
acttgtcagtttcattcattcaaatgctaagagctcttatgcccgtggccgtttactacatcggggtttcttttaaaaaagagtcgtttaaaaaagaaac |
413 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
242174 |
acttgtcagtttcattcattcaaatgctaaaagctcttatgcccgtggccgtttactccatcggggtttcttttaaaaaagaatcgtttaaaaaagaaac |
242273 |
T |
|
| Q |
414 |
catgatcaacatggtttctatatcacttggcgtcgctgtagctgcctatggcgaagccaagtttgatgtctttggtgttacgctacagctcatggctgta |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242274 |
catgatcaacatggtttctatatcacttggcgtcgctgtagctgcctatggcgaagccaagtttgatgtctttggtgttacgctacagctcatggctgta |
242373 |
T |
|
| Q |
514 |
gcgtttgaagccacgaggttggttttaattcaaatccttttgaactcgaaagggattaagttgaatcctattacctcgctttactacattgctccttgtt |
613 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242374 |
gcgtttgaagccacgaggttggttttaattcaaattcttttgaactcgaaagggattaagttgaatcctattacctcgctttactacattgctccttgtt |
242473 |
T |
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| Q |
614 |
gtt |
616 |
Q |
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||| |
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| T |
242474 |
gtt |
242476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 49574603 - 49574727
Alignment:
| Q |
38 |
tatcatacacatatgtagccatatggattttcttaagtttttcagtaattgtctacaacaaatacatcctagaccaaaaaatgtacaattggccattccc |
137 |
Q |
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|||| |||||||| ||||| |||||||| |||||| || | || || || ||||||||||||||| ||||| |||| |||||||||||||||||||| |
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| T |
49574603 |
tatcctacacatacgtagcgatatggatcttcttatcattcactgttatcgtttacaacaaatacatcttagacaaaaagatgtacaattggccattccc |
49574702 |
T |
|
| Q |
138 |
aatatcactaacaatgatccacatg |
162 |
Q |
| |
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||| || |||||||||||||||||| |
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| T |
49574703 |
aatttccctaacaatgatccacatg |
49574727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 470
Target Start/End: Original strand, 49574833 - 49575035
Alignment:
| Q |
268 |
gcactttactctctttccctttggttctcaaactctgcttacatttacttgtcagtttcattcattcaaatgctaagagctcttatgcccgtggccgttt |
367 |
Q |
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||||| || |||||||| || ||||| ||||| || ||||||||||| | || ||||| || ||||||||||| | |||||||||||| || || |||| |
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| T |
49574833 |
gcactctattctctttctctctggttatcaaattccgcttacatttatctctctgtttcttttattcaaatgcttaaagctcttatgcctgtcgctgttt |
49574932 |
T |
|
| Q |
368 |
actacatcggggtttcttttaaaaaagagtcgtttaaaaaagaaaccatgatcaacatggtttctatatcacttggcgtcgctgtagctgcctatggcga |
467 |
Q |
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| | |||||| ||| | | | |||||| || | |||||| || |||||| | |||||| |||| || ||| | || || ||||| ||||| ||||| || |
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| T |
49574933 |
attccatcggcgttggtctcagaaaagaatcttataaaaatgataccatgtttaacatgctttccatttcaatgggtgttgctgttgctgcttatggtga |
49575032 |
T |
|
| Q |
468 |
agc |
470 |
Q |
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||| |
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| T |
49575033 |
agc |
49575035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 770 - 675
Alignment:
| Q |
91 |
tacaacaaatacatcctagaccaaaaaatgtacaattggccattcccaatatcactaacaatgatccacatggccttttgttcctcccttgcttac |
186 |
Q |
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||||||||||||||| |||| | || |||||||||||||| | ||| || || ||||| ||||| |||||||| |||||||| ||||| |||||| |
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| T |
770 |
tacaacaaatacatcttagatcgtaagatgtacaattggccttacccgatctctctaaccatgattcacatggctttttgttcttccctcgcttac |
675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 47014631 - 47014536
Alignment:
| Q |
91 |
tacaacaaatacatcctagaccaaaaaatgtacaattggccattcccaatatcactaacaatgatccacatggccttttgttcctcccttgcttac |
186 |
Q |
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||||||||||||||| |||| | || |||||||||||||| | ||| || || ||||| ||||| |||||||| |||||||| ||||| |||||| |
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| T |
47014631 |
tacaacaaatacatcttagatcgtaagatgtacaattggccttacccgatctctctaaccatgattcacatggctttttgttcttccctcgcttac |
47014536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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