View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20582_low_21 (Length: 328)

Name: NF20582_low_21
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20582_low_21
NF20582_low_21
[»] chr3 (48 HSPs)
chr3 (1-324)||(6840247-6840570)
chr3 (1-217)||(6840627-6840843)
chr3 (1-193)||(6522023-6522212)
chr3 (1-193)||(6840924-6841113)
chr3 (1-193)||(6522158-6522347)
chr3 (106-324)||(8453098-8453313)
chr3 (1-313)||(6521501-6521807)
chr3 (1-313)||(6528247-6528553)
chr3 (1-193)||(6521888-6522077)
chr3 (1-193)||(6522293-6522482)
chr3 (1-193)||(6522833-6523022)
chr3 (1-193)||(6840789-6840978)
chr3 (1-135)||(6522483-6522617)
chr3 (1-193)||(6522563-6522752)
chr3 (75-296)||(8570334-8570552)
chr3 (1-135)||(6521808-6521942)
chr3 (1-135)||(6522753-6522887)
chr3 (106-313)||(6945731-6945938)
chr3 (31-277)||(6796013-6796256)
chr3 (106-313)||(8470023-8470227)
chr3 (1-193)||(6556065-6556254)
chr3 (1-313)||(6555813-6556119)
chr3 (75-318)||(6932027-6932265)
chr3 (75-193)||(6522968-6523083)
chr3 (106-276)||(8588275-8588442)
chr3 (1-123)||(6734167-6734289)
chr3 (1-123)||(6781374-6781496)
chr3 (28-313)||(6734338-6734617)
chr3 (2-193)||(6840516-6840704)
chr3 (75-313)||(6481348-6481583)
chr3 (182-318)||(6486356-6486492)
chr3 (75-193)||(6841059-6841174)
chr3 (77-202)||(7586305-7586427)
chr3 (75-217)||(6528475-6528614)
chr3 (97-278)||(6450195-6450373)
chr3 (97-278)||(6730123-6730301)
chr3 (28-135)||(6781218-6781325)
chr3 (77-217)||(6734108-6734245)
chr3 (77-217)||(6781418-6781555)
chr3 (75-137)||(6942368-6942430)
chr3 (103-193)||(6556200-6556287)
chr3 (2-55)||(6945765-6945818)
chr3 (75-135)||(5297180-5297240)
chr3 (77-137)||(6796288-6796348)
chr3 (75-212)||(6592813-6592947)
chr3 (143-237)||(5248677-5248771)
chr3 (1-79)||(6796073-6796151)
chr3 (1-55)||(7586364-7586418)
[»] scaffold1643 (1 HSPs)
scaffold1643 (75-252)||(602-779)
[»] scaffold0425 (3 HSPs)
scaffold0425 (1-134)||(9169-9302)
scaffold0425 (27-313)||(8861-9141)
scaffold0425 (77-135)||(9303-9361)
[»] scaffold0958 (1 HSPs)
scaffold0958 (108-212)||(1256-1357)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 6840570 - 6840247
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6840570 agcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaataactaatc 6840471  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaa 200  Q
    | ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  6840470 tccagcttttgtaaagaagtaaggtgtttaggcagcactgcctttttcaatttgggacattttcttatagaaatctttttaagcaaaggaaacccttcaa 6840371  T
Q  201 gacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6840370 gacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgtcgaatcgttgtcgtaaaactcttgatc 6840271  T
Q  301 gatgatctttatttcatctcagtc 324  Q
    |||||||||||||||||| |||||    
T  6840270 gatgatctttatttcatcacagtc 6840247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6840843 - 6840627
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6840843 agcccttttcaattcgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaatcacaaatc 6840744  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaa 200  Q
    |||||||||||||||||||||||||||||||| ||||  ||| |||| |||||||| || | |||||||||||| | |||||||||||||| ||||||||    
T  6840743 ttcagtttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatagaaatctctttaagcaaaggaatcccttcaa 6840644  T
Q  201 gacaaaaccatttctcc 217  Q
    |||||||||||||||||    
T  6840643 gacaaaaccatttctcc 6840627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6522212 - 6522023
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||    
T  6522212 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaattccgaatc 6522113  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    | |||||||||||||||||||||||||||| ||||    ||| ||||||||| |||||| | |||||||||||| | ||||||||||||||||    
T  6522112 tccagtttttgtaaagaaggaaggtgttgatgcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6841113 - 6840924
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||    
T  6841113 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaatcccaaatc 6841014  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    |  || |||||||||||||||||||||||||||||    ||| ||||||||| |||||| | |||||||||||| | ||||||||||||||||    
T  6841013 tctagattttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6522347 - 6522158
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||    
T  6522347 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaattccgaatc 6522248  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    | ||| |||||||||||||||||||||||| ||||    ||| ||||||||| |||||| | |||||||||||| | ||||||||||||||||    
T  6522247 tccagattttgtaaagaaggaaggtgttgatgcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 106 - 324
Target Start/End: Original strand, 8453098 - 8453313
Alignment:
Q  106 tttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaa 205  Q
    ||||||||||||||||||||||||||||||    | | |||||||||||||||||||||||||| |||  | |||||||||||||||||||||||||||     
T  8453098 tttttgtaaagaaggaaggtgttgaggcagg---gacattttcaatttgggacattctcttatataaagctctttaagcaaaggaaacccttcaagacac 8453194  T
Q  206 aaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatcgatga 305  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||  | ||| || |||||    ||||||||||||||| | | ||||    
T  8453195 aaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagagacctgaacagcacatttattgaactactgtcgtaaaactcttcacctatga 8453294  T
Q  306 tctttatttcatctcagtc 324  Q
    |||||||| |||| |||||    
T  8453295 tctttattccatcacagtc 8453313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 6521807 - 6521501
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  6521807 agcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcactgatc 6521708  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaa 200  Q
    |||| |||||||||||||| |||||||||||||||   |||  |||||||||| ||||| | | ||||| |||  | |||||||| |||||||| |   |    
T  6521707 ttcaatttttgtaaagaagaaaggtgttgaggcag-ggtgc--ttttcaatttaggacaattttttatataaagctctttaagcagaggaaacctt---a 6521614  T
Q  201 gacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatc 300  Q
     ||| | ||||| |||||| |||  ||| | || |||| |||||  || ||| ||| | |||||||||||||||||||  ||| | ||||| |||| |||    
T  6521613 cacatatccattcctcccagttgaccatatcctgaaatctcaaatattgaagggacttgaatggaacaattgttgaattattgccataaaaatcttcatc 6521514  T
Q  301 gatgatctttatt 313  Q
     ||||||||||||    
T  6521513 aatgatctttatt 6521501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 6528553 - 6528247
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | | ||     
T  6528553 agcccttttcaattcgggacaacttgttatagaaatctctttaagcaaaggaaactctccaaggcataaccattcctccaacttgttgcaattatttatg 6528454  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaa 200  Q
      || |||||||||||||||||| ||||||||||    |||  |||||||||| ||||| | |||||||||||  | ||||||||||||||||| |   |    
T  6528453 cacaatttttgtaaagaaggaagctgttgaggca-aggtgc--ttttcaatttaggacaatttcttatagaaagctctttaagcaaaggaaacctt---a 6528360  T
Q  201 gacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatc 300  Q
    |||| | |||||||||||| ||   ||| ||||||||| || ||| || ||| ||| | |||||||||||||||||||  ||||| ||||| |||| |||    
T  6528359 gacatatccatttctcccagttcaccatattctcaaatatcgaaaattgaagggacttgaatggaacaattgttgaattattgtcataaaaatcttcatc 6528260  T
Q  301 gatgatctttatt 313  Q
     ||||||||||||    
T  6528259 aatgatctttatt 6528247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6522077 - 6521888
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||   |      
T  6522077 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcaaataca 6521978  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    | |||||||||||||||||||||||||||||||||    ||| ||||||||| |||||| | |||||||||||| | ||||||||||||||||    
T  6521977 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6521888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6522482 - 6522293
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||   |      
T  6522482 agcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctgcaactcgttgcaatcaaataca 6522383  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    | |||||||||||||||||||||||||||||||||    ||| ||||||||| |||||| | |||||||||||| | ||||||||||||||||    
T  6522382 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6523022 - 6522833
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||   |      
T  6523022 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcaaataca 6522923  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    | |||||||||||||||||||||||||||||||||    ||| ||||||||| |||||| | |||||||||||| | ||||||||||||||||    
T  6522922 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6840978 - 6840789
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||    
T  6840978 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaatcccaaatc 6840879  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    |  || |||||||||||||||||||||||||||||    ||| ||||||||| |||||| ||   ||||||||| | ||||||||||||||||    
T  6840878 tctagattttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatcggatatagaaatctctttaagcaaaggaaac 6840789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6522617 - 6522483
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||    
T  6522617 agcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaattccgaatc 6522518  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcag 135  Q
    | |||||||||||||||||||||||||||| ||||    
T  6522517 tccagtttttgtaaagaaggaaggtgttgatgcag 6522483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6522752 - 6522563
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||   |      
T  6522752 agcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctgcaactcgttgcaatcaaataca 6522653  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    | |||||||||||||||||||||||||||||||||    ||| ||||||||| |||||| | | |||||||||| | ||||||||||||||||    
T  6522652 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaac 6522563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 75 - 296
Target Start/End: Complemental strand, 8570552 - 8570334
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||||||||| |||||| |||| |||| ||||||||||||||||||||||||| |||||||    ||| |||||||| || |||| | |||||||||||     
T  8570552 cctccaacttcttgcaatcactgatctccagtttttgtaaagaaggaaggtgtcgaggcagg---gcccttttcaatctgtgacaatatcttatagaaag 8570456  T
Q  175 atttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgtt 274  Q
     ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    |||||| |||||||||||| ||||| || |||| |||||||    
T  8570455 ctttttaagcaaaggaaacccttcaatacaaaaccattcctcccaattgttcatccatgcaaattccaaaacttcaagggacctgaacggaataattgtt 8570356  T
Q  275 gaatcgttgtcgtaaaactctt 296  Q
    |||   ||| ||||||||||||    
T  8570355 gaactattgccgtaaaactctt 8570334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6521942 - 6521808
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||    
T  6521942 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaattccgaatc 6521843  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcag 135  Q
    | |||||||||||||||||||||||||||| ||||    
T  6521842 tccagtttttgtaaagaaggaaggtgttgatgcag 6521808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6522887 - 6522753
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||    
T  6522887 agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaattccgaatc 6522788  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcag 135  Q
    | |||||||||||||||||||||||||||| ||||    
T  6522787 tccagtttttgtaaagaaggaaggtgttgatgcag 6522753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 106 - 313
Target Start/End: Original strand, 6945731 - 6945938
Alignment:
Q  106 tttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaa 205  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||||| | |||||||| ||  | ||||||||||||||||| |||| |||||    
T  6945731 tttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacctttcaggacaa 6945830  T
Q  206 aaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatcgatga 305  Q
    ||||||| ||||||||||  ||| | ||| ||||||||||||||||| ||||| || |||||| |||||| |   |||| |||||||||||   ||||||    
T  6945831 aaccattcctcccaattgaccatatgctccaatttcaaaacttcaagggacctgaacggaacatttgttgtactattgttgtaaaactcttcgccgatga 6945930  T
Q  306 tctttatt 313  Q
    ||||||||    
T  6945931 tctttatt 6945938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 31 - 277
Target Start/End: Complemental strand, 6796256 - 6796013
Alignment:
Q  31 agaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttga 130  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |  |||||  | | |||  || |||||||||||||||||||| ||||    
T  6796256 agaaatctctttaagcaaaggaaactctccagggcataaccattcctcaaacatcatgcaattattgatccacaatttttgtaaagaaggaaggttttga 6796157  T
Q  131 ggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatct 230  Q
    ||| |    ||| ||||||||| | ||||   | ||||| |||  | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6796156 ggctga---gcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaaaaccattcctcccaattgtccatct 6796060  T
Q  231 tctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaa 277  Q
     ||||||||||||||| ||||| ||||| || | |||| ||||||||    
T  6796059 cctcaaatttcaaaacctcaagggacctgaacgaaacatttgttgaa 6796013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 106 - 313
Target Start/End: Original strand, 8470023 - 8470227
Alignment:
Q  106 tttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaa 205  Q
    |||||||||||||||||||||||||||||    |||  || |||||| ||||||   | |||||||||  | |||||||||||||||||||||||||||     
T  8470023 tttttgtaaagaaggaaggtgttgaggcaa---tgcgcttctcaattcgggacagctttttatagaaagctctttaagcaaaggaaacccttcaagacac 8470119  T
Q  206 aaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatcgatga 305  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||| |||   || |||||| ||||||||| |||| | | |||||||| | | || |    
T  8470120 aaccattcctcccaactgttcatcttcacaaatttcaaaacttcaagggacaagaacggaacatttgttgaattgttgccatgaaactcttcaccaatta 8470219  T
Q  306 tctttatt 313  Q
    ||||||||    
T  8470220 tctttatt 8470227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6556254 - 6556065
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| | |||||||   |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||   |      
T  6556254 agcccttttcaattcgagacaatttcttatagaaaacactttaagcaaaggaaactctccaaggcataacaattcctccaactcgttgcaatcaaataca 6556155  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
      |||||||||||||||||||||||||||||| ||    ||| ||||||||| |||||| | ||||||  |||  | ||||||||||||||||    
T  6556154 cccagtttttgtaaagaaggaaggtgttgaggaag---agcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaac 6556065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 6556119 - 6555813
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||   |||  ||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||||| || | |||    
T  6556119 agcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaactctccaaggcataaacattcctccaacatgttgcaatcattgatc 6556020  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaa 200  Q
      ||  ||||||||||| ||||| ||||||||||  |||    |||||||||| ||||| | |  |||| |||  | |||||||| |||||||| |   |    
T  6556019 cacaaattttgtaaagatggaagatgttgaggcaatact---cttttcaatttaggacaattttctatataaagctctttaagcagaggaaacctt---a 6555926  T
Q  201 gacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatc 300  Q
     ||| | ||||| |||||| |||  ||| | ||||||| |||||  |||||| ||| | |||||||||||||||||||  ||| | |||||||||| |||    
T  6555925 cacatatccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaattattgccataaaactcttcatc 6555826  T
Q  301 gatgatctttatt 313  Q
     ||||||||||||    
T  6555825 aatgatctttatt 6555813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 75 - 318
Target Start/End: Original strand, 6932027 - 6932265
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||    ||| ||||||||| | | ||| |||||    |||     
T  6932027 cctcaaacttgtggcaatcactaatctccagtttttgtaaagaaggaaggtgttgaggaaga---gcccttttcaattcgagccatcctcttgagtaaag 6932123  T
Q  175 atttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgtt 274  Q
     | | |||||||||||||||| |||||||| ||||||| |||| ||   | |||||  |||||| ||||||||||||| ||||||||||||| |||||||    
T  6932124 ctctctaagcaaaggaaacccatcaagacataaccattcctccaaacaatgcatctagtcaaatatcaaaacttcaagggacctaaatggaaaaattgtt 6932223  T
Q  275 gaatcgttgtcgtaaaactcttgatcgatgatctttatttcatc 318  Q
      ||  ||||||||||| |||| |  ||||||||||||||||||    
T  6932224 --attattgtcgtaaaattcttcactgatgatctttatttcatc 6932265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 6523083 - 6522968
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||| |||||| | ||||||||||||    
T  6523083 cctccatcttgttgcaattactaatcttcagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaat 6522987  T
Q  175 atttttaagcaaaggaaac 193  Q
     | ||||||||||||||||    
T  6522986 ctctttaagcaaaggaaac 6522968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 276
Target Start/End: Original strand, 8588275 - 8588442
Alignment:
Q  106 tttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaa 205  Q
    |||||||||||||||||||||||||||||     ||| |||||||||  |||||||| |||||| | |  |||||||||||||||||||||| ||| ||     
T  8588275 tttttgtaaagaaggaaggtgttgaggcaaa---gcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacccttgaaggcat 8588371  T
Q  206 aaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttga 276  Q
    | ||||| ||||||||||| ||||   | ||||| |||||||||||| ||||| |||||||||||||||||    
T  8588372 atccattcctcccaattgtccatccgtttaaattccaaaacttcaagagacctgaatggaacaattgttga 8588442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6734167 - 6734289
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    ||||||||||||||  | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | |||    
T  6734167 agcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgatc 6734266  T
Q  101 ttcagtttttgtaaagaaggaag 123  Q
      || |||||||||||| |||||    
T  6734267 cgcaatttttgtaaagatggaag 6734289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 6781496 - 6781374
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    ||||||||||||||  | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | |||    
T  6781496 agcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctccaaggcataaccattcctccaacatgttgcaatcattgatc 6781397  T
Q  101 ttcagtttttgtaaagaaggaag 123  Q
      || |||||||||||| |||||    
T  6781396 cgcaatttttgtaaagatggaag 6781374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 6734338 - 6734617
Alignment:
Q  28 tatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgt 127  Q
    |||| ||| |||||||||  || ||||| || |||| |||||| ||||||||||||  |||||| ||||||| |||| |||||||||||||||||| |||    
T  6734338 tatataaagctctttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccactaatattcaatttttgtaaagaaggaagatgt 6734437  T
Q  128 tgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttca 227  Q
    ||||||||   ||||  ||||| ||| ||||| | | |||||||||  | | ||||||||||||||| |   | ||| | ||||| |||||| |||  ||    
T  6734438 tgaggcag-ggtgcc--tttcagtttaggacaatttgttatagaaagctctataagcaaaggaaacctt---acacatatccattcctcccagttgacca 6734531  T
Q  228 tcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatcgatgatctttatt 313  Q
    | | ||||||| |||||  |||||| ||| | |||||||||||||||||||  ||| | |||||||||| ||| ||||||||||||    
T  6734532 tatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaattattgccataaaactcttcatcaatgatctttatt 6734617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 6840704 - 6840516
Alignment:
Q  2 gcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatct 101  Q
    |||||||| |||||||| |||||   |||||||||||||||||||||||||| | || |||| || ||| ||| |||||||| ||||||| ||   |  |    
T  6840704 gccctttttaatttggggcaatttcttatagaaatctctttaagcaaaggaatcccttcaagacaaaaccatttctccaactcgttgcaatcaaatacat 6840605  T
Q  102 tcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
     ||||||||||||||||||||||||||| |||||    ||| |||||||||||||||| ||   |||| |||| | ||||||||||||||||    
T  6840604 gcagtttttgtaaagaaggaaggtgttgtggcag---agcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaac 6840516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 75 - 313
Target Start/End: Complemental strand, 6481583 - 6481348
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||||||||||||||||  | |||||  || ||| ||||||||||||||||||||||| ||    ||| |||||||||||||||| ||| |||||| ||     
T  6481583 cctccaacttgttgcaattaataatcgacaatttctgtaaagaaggaaggtgttgaggaagg---gcccttttcaatttgggacaatcttttatagtaag 6481487  T
Q  175 atttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgtt 274  Q
     | ||||||| |  ||||||||||| |||| ||||||| |||| |||| | ||||  || ||||| |||||||||||| ||||| |||| | ||||| ||    
T  6481486 ctctttaagcgacagaaacccttcatgacataaccattcctccaaattttccatccgctgaaattccaaaacttcaagagacctgaatgcatcaattttt 6481387  T
Q  275 gaatcgttgtcgtaaaactcttgatcgatgatctttatt 313  Q
    ||||  ||  | || ||||||| | ||||||||||||||    
T  6481386 gaattatttccatataactcttcaccgatgatctttatt 6481348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 182 - 318
Target Start/End: Complemental strand, 6486492 - 6486356
Alignment:
Q  182 agcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgt 281  Q
    |||||||||||||| |||||||| ||||| | |||| ||   | |||||  |||||| ||||||||||||| ||||||||||||| |||||||||||  |    
T  6486492 agcaaaggaaacccatcaagacataaccagtcctccaaacaatgcatctagtcaaatatcaaaacttcaagggacctaaatggaaaaattgttgaattat 6486393  T
Q  282 tgtcgtaaaactcttgatcgatgatctttatttcatc 318  Q
    |||||||||| |||| |  ||||||||||||||||||    
T  6486392 tgtcgtaaaattcttcactgatgatctttatttcatc 6486356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 6841174 - 6841059
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||||| |||||||||| | | ||||| |||||||||||||||||||||||||||||||||    ||| ||||||||| |||||| | ||||||||||||    
T  6841174 cctccatcttgttgcaatcccaaatctgcagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaat 6841078  T
Q  175 atttttaagcaaaggaaac 193  Q
     | ||||||||||||||||    
T  6841077 ctctttaagcaaaggaaac 6841059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 7586305 - 7586427
Alignment:
Q  77 tccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatat 176  Q
    |||||||| |||||| |  |||||| |||||| ||||||||||||||||||||||||||    ||| ||||||| |||||||||| | |||||||||  |    
T  7586305 tccaacttcttgcaatctttaatctccagtttctgtaaagaaggaaggtgttgaggcag---agcccttttcaacttgggacatttttttatagaaagct 7586401  T
Q  177 ttttaagcaaaggaaacccttcaaga 202  Q
     |||||||||||||||||||||||||    
T  7586402 ctttaagcaaaggaaacccttcaaga 7586427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 6528614 - 6528475
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||||| |||| ||||| || |||||| |||||||||||||||||||||||||||||||||    ||| ||||||||| ||||||   | ||||||||||    
T  6528614 cctccatcttgctgcaatcaataatctccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaacttgttatagaaat 6528518  T
Q  175 atttttaagcaaaggaaacccttcaagacaaaaccatttctcc 217  Q
     | |||||||||||||||| || |||| || ||||||| ||||    
T  6528517 ctctttaagcaaaggaaactctccaaggcataaccattcctcc 6528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 6450373 - 6450195
Alignment:
Q  97 aatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaaccct 196  Q
    |||||||| ||||| ||||||||||||||||||||||||    ||| |||||| ||||||||| | ||||||   ||  | |||||| | ||||||| ||    
T  6450373 aatcttcaatttttctaaagaaggaaggtgttgaggcagg---gcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactct 6450277  T
Q  197 tcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaat 278  Q
    |||| | | ||||||| ||||||||| | || || |||||||||||| |||||||| || || |||||||||||| ||||||    
T  6450276 tcaataaataaccattcctcccaattctccaactgctcaaatttcaatacttcaagagatctgaatggaacaattattgaat 6450195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 6730301 - 6730123
Alignment:
Q  97 aatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaaccct 196  Q
    |||||||| ||||| ||||||||||||||||||||||||    ||| |||||| ||||||||| | ||||||   ||  | |||||| | ||||||| ||    
T  6730301 aatcttcaatttttctaaagaaggaaggtgttgaggcagg---gcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactct 6730205  T
Q  197 tcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaat 278  Q
    |||| | | ||||||| ||||||||| | ||  | |||||||||||| |||||||| ||||| |||||||||||| ||||||    
T  6730204 tcaataaataaccattcctcccaattctccaattgctcaaatttcaatacttcaagagacctgaatggaacaattattgaat 6730123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 6781325 - 6781218
Alignment:
Q  28 tatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgt 127  Q
    |||| ||| |||||||||  || ||||| || |||| |||||| ||||||||||||  |||||| ||||||| |||| |||||||||||||||||| |||    
T  6781325 tatataaagctctttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccactaatattcaatttttgtaaagaaggaagatgt 6781226  T
Q  128 tgaggcag 135  Q
    ||||||||    
T  6781225 tgaggcag 6781218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 6734108 - 6734245
Alignment:
Q  77 tccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatat 176  Q
    ||||||||||||||| | ||||||| |||||| |||||||||||||||||||| |||||    ||| |||||||||  | |||||    |||||||||||    
T  6734108 tccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcag---agcccttttcaattcagaacatttgaatatagaaatat 6734204  T
Q  177 ttttaagcaaaggaaacccttcaagacaaaaccatttctcc 217  Q
     |||||||||||||||| || |||| || ||||||| ||||    
T  6734205 ctttaagcaaaggaaactctccaaggcataaccattcctcc 6734245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 6781555 - 6781418
Alignment:
Q  77 tccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatat 176  Q
    ||||||||||||||| | ||||||| |||||| |||||||||||||||||||| |||||    ||| |||||||||  | |||||    |||||||||||    
T  6781555 tccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcag---agcccttttcaattcagaacatttgaatatagaaatat 6781459  T
Q  177 ttttaagcaaaggaaacccttcaagacaaaaccatttctcc 217  Q
     |||||||||||||||| || |||| || ||||||| ||||    
T  6781458 ctttaagcaaaggaaactctccaaggcataaccattcctcc 6781418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 6942368 - 6942430
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagca 137  Q
    |||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||    
T  6942368 cctccatcttgttgcaataaccaatcttcagtttttgtaaagaaggaaggtgttgaggcagca 6942430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 6556287 - 6556200
Alignment:
Q  103 cagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaac 193  Q
    |||||||||||||||||||||||||||||||||    ||| ||||||||| | |||| | |||||||||||    ||||||||||||||||    
T  6556287 cagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgagacaatttcttatagaaaacactttaagcaaaggaaac 6556200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 6945765 - 6945818
Alignment:
Q  2 gcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaac 55  Q
    |||||||||||||||||||||||   ||||| || |||||||||||||||||||    
T  6945765 gcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaac 6945818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 5297180 - 5297240
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcag 135  Q
    |||||||||  | |||| |||||||||||| |||||| ||||||||||| |||||||||||    
T  5297180 cctccaactcttggcaatcactaatcttcaatttttgcaaagaaggaagatgttgaggcag 5297240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 6796348 - 6796288
Alignment:
Q  77 tccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagca 137  Q
    ||||||| || |||| ||| |||||||| ||| ||||||||||||||||||||||| ||||    
T  6796348 tccaactcgtagcaatcaccaatcttcattttctgtaaagaaggaaggtgttgaggaagca 6796288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 6592947 - 6592813
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||||||||  | |||| || |||||| || |||||| |||||||||||||||||||||||    ||  ||||||| |||||||| | | ||||| |||     
T  6592947 cctccaactcttggcaatcagtaatctccaatttttgcaaagaaggaaggtgttgaggcag---ggctcttttcaacttgggacaatgttttatacaaag 6592851  T
Q  175 atttttaagcaaaggaaacccttcaagacaaaaccatt 212  Q
     | || ||||||||| || ||||||||||| |||||||    
T  6592850 ctcttgaagcaaagggaaaccttcaagacataaccatt 6592813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 5248677 - 5248771
Alignment:
Q  143 tttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaa 237  Q
    |||| |||||||||||| | |||||||||||  | |||||||||||| || |  |||| ||| |||||||||| |||||||  ||| ||||||||    
T  5248677 ttttgcaatttgggacaatttcttatagaaagctgtttaagcaaagggaaacactcaacacataaccatttcttccaattggacatgttctcaaa 5248771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6796151 - 6796073
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctcc 79  Q
    |||||||||||||| | ||||| | | |||| ||| ||||||||||||||||||| || |||| || ||| ||||||||    
T  6796151 agcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaaaaccattcctcc 6796073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7586364 - 7586418
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaac 55  Q
    |||||||||||| |||||||| ||   |||||||| |||||||||||||||||||    
T  7586364 agcccttttcaacttgggacatttttttatagaaagctctttaagcaaaggaaac 7586418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 252
Target Start/End: Original strand, 602 - 779
Alignment:
Q  75 cctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaat 174  Q
    |||||| |||||||||| || |||| ||||||||||||||| |||||||||||||||||||    ||| |||  ||||||||||| | |||||||| ||     
T  602 cctccatcttgttgcaatcagtaatattcagtttttgtaaaaaaggaaggtgttgaggcagagtggccctttctaatttgggacactttcttatagtaag 701  T
Q  175 atttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaag 252  Q
     | |||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  702 ctctttaagcaaaggaaacccttcaggacacaaccattcctcccaattgttcaacttctcaaatttcaaaacttcaag 779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 9302 - 9169
Alignment:
Q  1 agcccttttcaatttgggacaattggatatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatc 100  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||  | | |||    
T  9302 agcccttttcaattcgggacaattggatatagaaaactcgttaagcaaaggaaactctccaaggcataaccattcctccaactcgttgcaataattgatc 9203  T
Q  101 ttcagtttttgtaaagaaggaaggtgttgaggca 134  Q
      ||  ||| ||||||||||||| ||||||||||    
T  9202 cgcaaatttagtaaagaaggaagatgttgaggca 9169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 313
Target Start/End: Complemental strand, 9141 - 8861
Alignment:
Q  27 atatagaaatctctttaagcaaaggaaactctccaaggcataacaattcctccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtg 126  Q
    ||||||||| |||||||||  || ||||| || |||| |||||| ||||||||||||  |||||| ||  |||  ||| |||||||||||||||||| ||    
T  9141 atatagaaagctctttaagagaaagaaacccttcaagacataaccattcctccaactctttgcaaccataaataatcaatttttgtaaagaaggaagatg 9042  T
Q  127 ttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttc 226  Q
    |||||||||   |||  |||||||||| ||||| | |  |||| |||  | |||||||| |||||||| |   | ||| | ||||| |||||| |||  |    
T  9041 ttgaggcag-ggtgc--ttttcaatttaggacaattttctatataaagctctttaagcagaggaaacctt---acacatatccattcctcccagttgacc 8948  T
Q  227 atcttctcaaatttcaaaacttcaagcgacctaaatggaacaattgttgaatcgttgtcgtaaaactcttgatcgatgatctttatt 313  Q
    || | | ||||| |||||  |||||| ||| | |||||||||||||||||||  ||| | ||||| |||| ||| ||||||||||||    
T  8947 atatccacaaatctcaaatattcaagggacttgaatggaacaattgttgaattattgccataaaattcttcatcaatgatctttatt 8861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 9361 - 9303
Alignment:
Q  77 tccaacttgttgcaaacactaatcttcagtttttgtaaagaaggaaggtgttgaggcag 135  Q
    ||||||||||||||| || ||||   || |||||||||||||||||||||||| |||||    
T  9361 tccaacttgttgcaatcattaatgaacaatttttgtaaagaaggaaggtgttgtggcag 9303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 1357 - 1256
Alignment:
Q  108 tttgtaaagaaggaaggtgttgaggcagcactgcctttttcaatttgggacattctcttatagaaatatttttaagcaaaggaaacccttcaagacaaaa 207  Q
    |||||||||||||||||||| |||| ||    ||| |||||||| || |||| | ||||||||||| ||||||||||||||||||||||||||||||| |    
T  1357 tttgtaaagaaggaaggtgtcgaggtagg---gcccttttcaatatgcgacaatatcttatagaaagatttttaagcaaaggaaacccttcaagacaata 1261  T
Q  208 ccatt 212  Q
    |||||    
T  1260 ccatt 1256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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