View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_23 (Length: 319)
Name: NF20582_low_23
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 38866502 - 38866776
Alignment:
| Q |
29 |
tgtgtcggacatgagtatatgtgtttcatagattcttccaaagtaagaatattgtaaaaacatataactcttctatagctgtgaatcacagctatagtaa |
128 |
Q |
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| T |
38866502 |
tgtgtcgga-atgagtatatgtgtttcatagattcttccaaagtaagaatattgtaaaaacatataactcttctatagctgtgaatcacagctatagtaa |
38866600 |
T |
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| Q |
129 |
tacataattcacaaggcattgaatcgatccagtattactattttagacagattattatactgatagatggtataaaaatactttcattcattgagtgagt |
228 |
Q |
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| T |
38866601 |
tacataattcacaaggcattgaatcaatccagtattactattttagacagattattatactgatagatggtataaaaatactttcattcattgagtgagt |
38866700 |
T |
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| Q |
229 |
tcaaagaatgttgaaatagtacataccaacttatttacnnnnnnntgtaagggatgtacaaatataaattggttct |
304 |
Q |
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| T |
38866701 |
tcaaagaatgttgaaatagtacataccaacttatttacaaaaaaatgtaagggatgtacaaatataaattggttct |
38866776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 165 - 305
Target Start/End: Complemental strand, 29169776 - 29169636
Alignment:
| Q |
165 |
actattttagacagattattatactgata---gatggtataaaaatactttcattcattgagtgagttcaaagaatgttgaaatagtacataccaactta |
261 |
Q |
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| T |
29169776 |
actatttcagacagattattaaactgataatagatgttataaaaatactttcattcattaagt----tcaaagaatgttgagatagtacatatcaagtta |
29169681 |
T |
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| Q |
262 |
tttac-nnnnnnntgtaagggatgtacaaatataaattggttctt |
305 |
Q |
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| T |
29169680 |
tttacaaaacaaatgtaagggatgtacaaatataaattggttctt |
29169636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 1759231 - 1759157
Alignment:
| Q |
192 |
tagatggtataaaaatactttcattcattgagtgagttcaaagaatgttgaaatagtacataccaacttatttac |
266 |
Q |
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||||||||||||||||||||| ||||||| | | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1759231 |
tagatggtataaaaatactttgattcattcattaagttcaaagaatgttgagatagtacataccaacttatttac |
1759157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 38157782 - 38157724
Alignment:
| Q |
165 |
actattttagacagattattatactgat---agatggtataaaaatactttcattcatt |
220 |
Q |
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| T |
38157782 |
actattttagacagattattaaactgatcatagatggtataaaaatactttcattcatt |
38157724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 38749513 - 38749462
Alignment:
| Q |
46 |
tatgtgtttcatagattcttccaaagtaa-gaatattgtaaaaacatataac |
96 |
Q |
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| T |
38749513 |
tatgtgtttcatagattcctccaaagtaaggattattgtaaaaacatataac |
38749462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 18988148 - 18988032
Alignment:
| Q |
187 |
actgatagatgg-tataaaaatactttcattcattgagtgagttcaaagaatgttgaaatagtacataccaacttatttac-nnnnnnntgtaagggatg |
284 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||| |||||||||||||||| |||||||||| |
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| T |
18988148 |
actgatagatgggtataaaaatactttcattcattaagt----tcaaagaatgttgagatagtatataccaacttatttacaaaacaaatgtaagggatc |
18988053 |
T |
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| Q |
285 |
tacaaatataaattggttctt |
305 |
Q |
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|||||||||| |||||||||| |
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| T |
18988052 |
tacaaatatagattggttctt |
18988032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 27463433 - 27463358
Alignment:
| Q |
187 |
actgatagatggtataaaaatactttcattcattgagtgagttcaaagaatgttgaaatagtacataccaacttatttac |
266 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
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| T |
27463433 |
actgatagatggtataaaaataatttcattcattatgt----tcaaagaatgttgagatagtacataccaacttatttac |
27463358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 27483763 - 27483729
Alignment:
| Q |
232 |
aagaatgttgaaatagtacataccaacttatttac |
266 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
27483763 |
aagaatgttgagatagtacataccaacttatttac |
27483729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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