View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_27 (Length: 274)
Name: NF20582_low_27
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 64 - 258
Target Start/End: Original strand, 3594872 - 3595066
Alignment:
| Q |
64 |
gaaaacagctcaaattgaataccctcaccaacctccaagggagaagcacgaatgcgattagagaacctctggttgcgattggagagaggttggagggtgg |
163 |
Q |
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| T |
3594872 |
gaaaacagctcaaactgaataccctcaccaacctccaatggagaagcacgaatgcggttagagaacctctggttgcgattggagagaggttggagggtgg |
3594971 |
T |
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| Q |
164 |
aagaatgacaaccacggccaccatgagcattagggcgccgggaaccaaggcaagattcatattcataatccaactcatcatcatcttctttgttg |
258 |
Q |
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| T |
3594972 |
aagaatgagaaccacggccaccatgagcattagggcgccgggaaccaaggcaagattcatattcataatccaactcatcatcatcttctttgttg |
3595066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 3594824 - 3594859
Alignment:
| Q |
14 |
acaaacaacaaattccaagtcacatttcaagaccat |
49 |
Q |
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| T |
3594824 |
acaaacaataaattccaagtcacatttcaagaccat |
3594859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 35713329 - 35713261
Alignment:
| Q |
103 |
ggagaagcacgaatgcgattagagaacctctggttgcgattggagagaggttggagggtggaagaatga |
171 |
Q |
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| T |
35713329 |
ggagaagcacgaatatgatgtgagaatttctggttacgattggagagaggttgaagtgttgaagaatga |
35713261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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