View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_28 (Length: 268)
Name: NF20582_low_28
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 49187008 - 49187187
Alignment:
| Q |
11 |
aatgagatgaaaggttaaaatattttatagaatgatttatattgggtgtatatagtaaaaaccaaaattgaatttgaatataaattgacaggcgaaaggc |
110 |
Q |
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| T |
49187008 |
aatgacatgaaaggttaaaatattttatagaatgatttatattgggtgtatatagtaaaaaccaaaattgaatttgaatataaattgacaggcgaaaggc |
49187107 |
T |
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| Q |
111 |
accagacacgagagacccaaaacactgtcatacgttaccgactctatttatatatctctctttccaatctcaatcccgta |
190 |
Q |
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| T |
49187108 |
accagacacgagagacacaaaacactgtcatacgttaccgactctatttatatatctctctatccaatctcaatcacgta |
49187187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 49187206 - 49187244
Alignment:
| Q |
212 |
gaaaatgggtgaagagagaagagtgatggaggagagtct |
250 |
Q |
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| T |
49187206 |
gaaaatgggtgaagagagaagagtgatggaggagagtct |
49187244 |
T |
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