View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20582_low_3 (Length: 628)

Name: NF20582_low_3
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20582_low_3
NF20582_low_3
[»] chr4 (4 HSPs)
chr4 (5-211)||(5731805-5732007)
chr4 (513-611)||(5731603-5731701)
chr4 (313-394)||(18182291-18182372)
chr4 (221-261)||(18182424-18182464)
[»] chr3 (2 HSPs)
chr3 (5-211)||(18655575-18655777)
chr3 (513-611)||(18655373-18655471)
[»] chr2 (1 HSPs)
chr2 (513-566)||(18160878-18160931)
[»] chr7 (1 HSPs)
chr7 (539-581)||(32882568-32882610)
[»] chr1 (1 HSPs)
chr1 (135-180)||(51300004-51300049)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 5732007 - 5731805
Alignment:
Q  5 gagtgagatgaagagggaaggtttgagttgaggaagaagaagggtggaaattagggac--agaggcagaagcagaattttatctagtgcaaattaattag 102  Q
    |||||||| ||||||||||||||||||||||||||||||   |||| |||   ||||   ||| ||||||||||||||||||||||||||||||||||||    
T  5732007 gagtgagacgaagagggaaggtttgagttgaggaagaag---ggtgaaaa---gggaagaagaagcagaagcagaattttatctagtgcaaattaattag 5731914  T
Q  103 tttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggatttttgatgatggtggatgaagt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5731913 tttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggatttttgatgatggtggatgaagt 5731814  T
Q  203 tgttgaaga 211  Q
    |||||||||    
T  5731813 tgttgaaga 5731805  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 513 - 611
Target Start/End: Complemental strand, 5731701 - 5731603
Alignment:
Q  513 ccctctccatgtgtgacttataatccagtttgtcacgtcagcattgtctgccacgttacccactgccacaacatcccccgtcagcggcatgtacgtttt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5731701 ccctctccatgtgtgacttataatccagtttgtcacgtcagcattgtctgccacgttacccactgccacaacatcccccgtcaacggcatgtacgtttt 5731603  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 313 - 394
Target Start/End: Complemental strand, 18182372 - 18182291
Alignment:
Q  313 gagaatttgactatacgaattaaaatgacgatattgttttattgataaaaattatttgataaatcgatcaaaatagtattct 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18182372 gagaatttgactatacgaattaaaatgacgatattgttttattgataaaaattatttgataaatcgatcaaaatagtattct 18182291  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 18182464 - 18182424
Alignment:
Q  221 agattagataaaaatatgaattctatttattatttattctt 261  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  18182464 agattagatgaaaatatgaattctatttattatttattctt 18182424  T

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Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 18655777 - 18655575
Alignment:
Q  5 gagtgagatgaagagggaaggtttgagttgaggaagaagaagggtggaaattagggac--agaggcagaagcagaattttatctagtgcaaattaattag 102  Q
    |||||||| ||||||||||||||||||||||||||||||   |||| |||   ||||   ||| ||||||||||||||||||||||||||||||||||||    
T  18655777 gagtgagacgaagagggaaggtttgagttgaggaagaag---ggtgaaaa---gggaagaagaagcagaagcagaattttatctagtgcaaattaattag 18655684  T
Q  103 tttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggatttttgatgatggtggatgaagt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18655683 tttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggatttttgatgatggtggatgaagt 18655584  T
Q  203 tgttgaaga 211  Q
    |||||||||    
T  18655583 tgttgaaga 18655575  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 513 - 611
Target Start/End: Complemental strand, 18655471 - 18655373
Alignment:
Q  513 ccctctccatgtgtgacttataatccagtttgtcacgtcagcattgtctgccacgttacccactgccacaacatcccccgtcagcggcatgtacgtttt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18655471 ccctctccatgtgtgacttataatccagtttgtcacgtcagcattgtctgccacgttacccactgccacaacatcccccgtcaacggcatgtacgtttt 18655373  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 566
Target Start/End: Original strand, 18160878 - 18160931
Alignment:
Q  513 ccctctccatgtgtgacttataatccagtttgtcacgtcagcattgtctgccac 566  Q
    |||||||  |||||||||||| |||||||||||||||||||| | |||||||||    
T  18160878 ccctctcactgtgtgacttatcatccagtttgtcacgtcagcgtcgtctgccac 18160931  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 581
Target Start/End: Original strand, 32882568 - 32882610
Alignment:
Q  539 agtttgtcacgtcagcattgtctgccacgttacccactgccac 581  Q
    |||||||||||||||||| |||||||||||||  |||||||||    
T  32882568 agtttgtcacgtcagcatcgtctgccacgttagacactgccac 32882610  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 51300004 - 51300049
Alignment:
Q  135 tttttgaatttatggatttgggtttgaagatgataaatttctggat 180  Q
    ||||||||||| ||||||||||||||||  |||| |||||||||||    
T  51300004 tttttgaatttctggatttgggtttgaaagtgatgaatttctggat 51300049  T

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