View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20582_low_30 (Length: 254)

Name: NF20582_low_30
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20582_low_30
NF20582_low_30
[»] chr5 (8 HSPs)
chr5 (1-180)||(38181025-38181204)
chr5 (1-180)||(38189927-38190106)
chr5 (1-180)||(38208249-38208428)
chr5 (1-180)||(38217152-38217331)
chr5 (1-180)||(38456385-38456564)
chr5 (4-180)||(26033029-26033208)
chr5 (179-254)||(40264136-40264211)
chr5 (121-154)||(38447655-38447688)
[»] chr3 (1 HSPs)
chr3 (36-154)||(6067743-6067860)
[»] chr4 (1 HSPs)
chr4 (11-69)||(53351249-53351307)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 38181025 - 38181204
Alignment:
Q  1 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38181025 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 38181124  T
Q  101 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38181125 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 38181204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 38190106 - 38189927
Alignment:
Q  1 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190106 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 38190007  T
Q  101 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190006 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 38189927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 38208249 - 38208428
Alignment:
Q  1 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38208249 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 38208348  T
Q  101 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38208349 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 38208428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 38217331 - 38217152
Alignment:
Q  1 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217331 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 38217232  T
Q  101 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217231 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 38217152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 38456385 - 38456564
Alignment:
Q  1 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456385 agttgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaa 38456484  T
Q  101 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456485 tgaaaaacttttagatgttccaaacatgttctacaataatgtgggaagtacttcaacattgattgataggtgagtagatt 38456564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 26033208 - 26033029
Alignment:
Q  4 tgaatagtagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatga 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26033208 tgaatagtagccaacaaattgaggattcacaagaagatgaatttcatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatga 26033109  T
Q  104 aaaacttttagatgttccaaacatgttctacaataa---tgtgggaagtacttcaacattgattgataggtgagtagatt 180  Q
    ||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26033108 aaaacttttagatgtcccaaacatgttctacaataatattgtgggaagtacttcaacattgattgataggtgagtagatt 26033029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 40264136 - 40264211
Alignment:
Q  179 ttttagacacttgctttgtcaaattgtcatagcttaacttgatacatgcataacaactactcagtacttcttcacc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40264136 ttttagacacttgctttgtcaaattgtcatagcttaacttgatacatgcataacaactactcagtacttcttcacc 40264211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 38447655 - 38447688
Alignment:
Q  121 caaacatgttctacaataatgtgggaagtacttc 154  Q
    |||| |||||||||||||||||||||||||||||    
T  38447655 caaatatgttctacaataatgtgggaagtacttc 38447688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 6067860 - 6067743
Alignment:
Q  36 gaagatgaatttaatataccacaattgaaatttagaaaatatccatcaatttttgatgagataaatgaaaaacttttagatgttccaaacatgttctaca 135  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||    
T  6067860 gaagatgaattta-tataccacaattgaaatttagaaaatatccataaattttttatgagataaatgaaacacttttagatgtcccaaacatgttctaca 6067762  T
Q  136 ataatgtgggaagtacttc 154  Q
    |||| ||||||||||||||    
T  6067761 ataacgtgggaagtacttc 6067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 53351307 - 53351249
Alignment:
Q  11 tagccaacaagttgaggattcacaagaagatgaatttaatataccacaattgaaattta 69  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||    
T  53351307 tagccaacaagttaaggattcacaagatgatgaatttaatataccgcaagtgaaattta 53351249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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