View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_31 (Length: 253)
Name: NF20582_low_31
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 4070115 - 4069945
Alignment:
| Q |
20 |
cataaggttcatggcaagggaaataacaattttaaggaggcttgaccatccaaacataatgaagttggaaggaataattacttctcgaatgtcaaatagc |
119 |
Q |
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| T |
4070115 |
cataaggttcatggcaagggaaataacaattttaaggaggcttgaccatccaaacataatgaagttggaaggaataattacttctcgaatgtcaaatagc |
4070016 |
T |
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| Q |
120 |
atataccttgtgtttgaatacatggaacacgatcttgctggtcttgtatctcgttctgacattcttttcac |
190 |
Q |
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| T |
4070015 |
atataccttgtgtttgaatacatggaacatgatcttgctggtcttgtatctcgttctgacattgttttcac |
4069945 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 3252533 - 3252484
Alignment:
| Q |
111 |
tcaaatagcatataccttgtgtttgaatacatggaacacgatcttgctgg |
160 |
Q |
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| T |
3252533 |
tcaaagagtatataccttgtatttgaatacatggaacatgatcttgctgg |
3252484 |
T |
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