View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_33 (Length: 247)
Name: NF20582_low_33
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_33 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 38867357 - 38867120
Alignment:
| Q |
10 |
atgaactgagtgactcaataatgcattcttttttgccaattgtcatttgacatattattcaattgtcaaatgaaaagagattgaatgagtgttactaaaa |
109 |
Q |
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| T |
38867357 |
atgaactgagtgactcaataatgcattcttttttgccaattgtcatttgacatattattcaattgtcaaatgaaaagagattgaattagtgttactaaaa |
38867258 |
T |
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| Q |
110 |
gtaccgatttgataatgttttggtctgtttcattcattgaagcaggaacttctcatattcactatatgcaccttattcaacaacagttttgttttcgttc |
209 |
Q |
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| T |
38867257 |
gtaccgatttgataatgttttggtctgtttcattcattgaagcaggaacttcacatattcactatatgcaccttattcaacgacagttttgttttcgttc |
38867158 |
T |
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| Q |
210 |
ttcgaaaatggacccttcacacaggcacctagtgtgtt |
247 |
Q |
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| T |
38867157 |
ttcgaaaatggacccttcacacaggcacctagtgtgtt |
38867120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 38805692 - 38805900
Alignment:
| Q |
11 |
tgaactgagtgactcaataatgcattcttttttgccaattgtcatttgacatatt-attcaattgtcaaatgaaaagagattgaatgagtgttactaaaa |
109 |
Q |
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| T |
38805692 |
tgaactgagtgactcaatagtgcattcttttttgccaattgtcatttgacatatttattcaattgtcaaatgaaaagggattgaaggagtgttactaaaa |
38805791 |
T |
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| Q |
110 |
gtaccgatttgataatgttttggtctgtttcattcattgaagcaggaacttctcatattcactatatgcaccttattcaacaacagttttgttttcgttc |
209 |
Q |
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| T |
38805792 |
gtacccatttgattatgctttggtctgtttcattcattgaagcaggaacttcacatactcactacatgcaccttattcgacgacagttttgttttcgttc |
38805891 |
T |
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| Q |
210 |
ttcgaaaat |
218 |
Q |
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| T |
38805892 |
ttcaaaaat |
38805900 |
T |
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