View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_39 (Length: 229)
Name: NF20582_low_39
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_39 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 4358835 - 4358614
Alignment:
| Q |
6 |
atgagtaactatattaccagctcttctcacacgagacactaaaaatgaagaaaaaaaacaactagggctcctttttgtccccnnnnnnnnnnnnttaggg |
105 |
Q |
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| T |
4358835 |
atgagtaactatattatcagctcttctcacacgagacactaaaaatgaagaaaacaa-caactagggctcctttttgtccccaaaaaaaaaaa-ttaggg |
4358738 |
T |
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| Q |
106 |
ctttcacaatcatttagtcactaagcctaaataagaattatcatcaatatacaacttcaaaatcatcgaccaggttgaaccaccctccaccacaatattg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4358737 |
ctttcacaatcatttagtcactaagcctaaataagaattatcatcaatatacaacttcaaaatcatagaccaggttgaaccaccctccaccacaatattg |
4358638 |
T |
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| Q |
206 |
cgaaaactcatatcgtgagcaaat |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
4358637 |
cgaaaactcatatcgtgagcaaat |
4358614 |
T |
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