View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_4 (Length: 572)
Name: NF20582_low_4
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 91 - 532
Target Start/End: Original strand, 44828323 - 44828781
Alignment:
| Q |
91 |
tttgcagtgttaatatttatttatttcctttgtgcatatatattgacttatttatttagtctcagatagcagcaaaatcctagtaaa------atgagag |
184 |
Q |
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| T |
44828323 |
tttgcaatgttaatatttatttatttcctttgtgcatat----tgacttattta----gtctcagatagca---aaatccaagtaaacctgttataaatg |
44828411 |
T |
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| Q |
185 |
agaattgttcataattgagtaacattgaaaacaaatgctacatttcttttccatataattttgaaggaataggtaggtagttgcaaggcaaggaa--tgt |
282 |
Q |
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| T |
44828412 |
agaattgttcataattgagtaacattgaaaacaaatgctacatttctttcccatataattttgaaggaataggtagg----gccaaggcaagaaaattgt |
44828507 |
T |
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| Q |
283 |
t------------aattgacattaattgctgtggagtgttaataatatacac--agataacactttcaagataacttttcaattcttc--nnnnnnnnta |
366 |
Q |
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| T |
44828508 |
tgaattaaccacaagttgacattaattgcggtggaatgttaataatatacacaaagacaacactttcaagataacttttcaattcttcaaaaaaaaaaaa |
44828607 |
T |
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| Q |
367 |
ataacttttttcaagtgtcaatcaacaaattatgcttgtaatatcaatatttcttagccttgatat----------gcagtacagatcttaaa-aatgtc |
455 |
Q |
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| T |
44828608 |
aaaacttttttcaagtgtcaatcaacaaattatacatgtaatatcaatat---ttagcctttatatagaatgttaggcagtacagatcttaaagaatgtc |
44828704 |
T |
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| Q |
456 |
acttgcaagctaaataattccttccaaacgtagctaacaaatgtgggatccttgttactcacaattgcatgaagctt |
532 |
Q |
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| T |
44828705 |
acttgcaacctaaataattccttccaaacgtggctaagaaatgtaggatccttgtcactcacaattgcatgaagctt |
44828781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 44828221 - 44828287
Alignment:
| Q |
29 |
acagacatttcatgaactacgtacgcaatgttgaatagattatacaaatcaacggtgttgaatttgc |
95 |
Q |
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| T |
44828221 |
acagacatttcatgaactacgtacgcaatgttgaacagtttatacaaatcaacggtgttggatttgc |
44828287 |
T |
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