View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20582_low_41 (Length: 218)
Name: NF20582_low_41
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 19004583 - 19004770
Alignment:
| Q |
19 |
cttctccaatttagtcatagtcctgaattttgataacactcctgactccccctaagtgataactaaatctaaggttatggctcataatggtcctaaacta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19004583 |
cttctccaatttagtcatagtcctgaattttgataacactcctgactccccctaagtgataactaaatctaaggttatggttcataatggtcctaaacta |
19004682 |
T |
|
| Q |
119 |
tagctctaacttcaattctacaaaggatgcttagttcttcaaccttattcaacatacccttcttcgttttcttgtatgtttcttttct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
19004683 |
tagctctaacttcaattctacaaaggatgcttagttcttcaaccttattcagcagacccttcttcgttttcttgtatgtttcttttct |
19004770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 18950259 - 18950446
Alignment:
| Q |
19 |
cttctccaatttagtcatagtcctgaattttgataacactcctgactccccctaagtgataactaaatctaaggttatggctcataatggtcctaaacta |
118 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18950259 |
cttctccaatttaatcataatcctgaattttgataacacttctgactccccctaagtgatacctaaatctaaggttatggttcataatggtcctaaacta |
18950358 |
T |
|
| Q |
119 |
tagctctaacttcaattctacaaaggatgcttagttcttcaaccttattcaacatacccttcttcgttttcttgtatgtttcttttct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18950359 |
tagctctaacttcaattctacaaaggatgcttagttcttcaaccttattcaacatacccttcttcgttttcttgtatgtttcttttct |
18950446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 13308331 - 13308208
Alignment:
| Q |
83 |
aaatctaaggttatggctcataatggtcctaaactatagctctaacttcaattctacaaaggatgcttagttcttcaaccttattcaacatacccttctt |
182 |
Q |
| |
|
|||||| ||||| ||| |||||| | | ||||||||||| | | ||||||||| |||||| |||||||||| |||| ||| ||||| | ||||||| | |
|
|
| T |
13308331 |
aaatctcaggttgtggttcataaggaccgtaaactatagcacaagcttcaattccacaaagcgtgcttagttcgtcaatcttcttcaataaacccttcat |
13308232 |
T |
|
| Q |
183 |
cgttttcttgtatgtttcttttct |
206 |
Q |
| |
|
| |||||||||||||| ||||||| |
|
|
| T |
13308231 |
ccttttcttgtatgttacttttct |
13308208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University