View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20582_low_5 (Length: 563)

Name: NF20582_low_5
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20582_low_5
NF20582_low_5
[»] chr3 (32 HSPs)
chr3 (277-563)||(7158837-7159123)
chr3 (52-279)||(7158400-7158627)
chr3 (1-55)||(49607410-49607464)
chr3 (1-53)||(11095403-11095455)
chr3 (1-51)||(53982011-53982061)
chr3 (1-53)||(54868945-54868997)
chr3 (1-51)||(33644200-33644250)
chr3 (1-46)||(52629305-52629350)
chr3 (1-53)||(27714941-27714993)
chr3 (1-53)||(33118901-33118953)
chr3 (1-52)||(24700004-24700055)
chr3 (1-56)||(31456684-31456739)
chr3 (1-51)||(8076393-8076443)
chr3 (1-51)||(14623889-14623939)
chr3 (5-54)||(36707478-36707527)
chr3 (1-57)||(8956756-8956812)
chr3 (3-47)||(48587143-48587187)
chr3 (1-52)||(17470404-17470455)
chr3 (1-52)||(35536625-35536676)
chr3 (1-51)||(26141582-26141632)
chr3 (5-52)||(9562998-9563045)
chr3 (5-52)||(36331432-36331479)
chr3 (5-55)||(11347976-11348026)
chr3 (1-47)||(30801783-30801829)
chr3 (1-51)||(41080709-41080758)
chr3 (1-51)||(45058603-45058652)
chr3 (13-51)||(47531865-47531903)
chr3 (1-51)||(51419410-51419460)
chr3 (1-50)||(13898105-13898154)
chr3 (5-46)||(26754700-26754741)
chr3 (1-53)||(41189814-41189866)
chr3 (28-56)||(48587014-48587042)
[»] chr5 (25 HSPs)
chr5 (295-551)||(4866987-4867255)
chr5 (162-276)||(4866635-4866751)
chr5 (293-563)||(4813845-4814116)
chr5 (1-56)||(18520934-18520989)
chr5 (1-56)||(36875653-36875708)
chr5 (1-53)||(36732992-36733044)
chr5 (1-52)||(2740273-2740324)
chr5 (1-56)||(14831809-14831864)
chr5 (1-51)||(33149688-33149738)
chr5 (1-51)||(35785199-35785249)
chr5 (488-551)||(4244623-4244686)
chr5 (1-55)||(13811648-13811702)
chr5 (1-51)||(28177775-28177825)
chr5 (9-51)||(40145407-40145449)
chr5 (1-51)||(42414352-42414402)
chr5 (1-54)||(3921315-3921368)
chr5 (1-51)||(35943942-35943992)
chr5 (3-51)||(26720516-26720564)
chr5 (3-51)||(26990265-26990313)
chr5 (1-52)||(2252218-2252269)
chr5 (1-52)||(6679697-6679748)
chr5 (4-51)||(20073569-20073616)
chr5 (1-53)||(15409660-15409712)
chr5 (28-56)||(16115245-16115273)
chr5 (28-56)||(33149551-33149579)
[»] chr2 (25 HSPs)
chr2 (1-52)||(7465785-7465836)
chr2 (1-51)||(17473020-17473070)
chr2 (1-55)||(33436150-33436204)
chr2 (1-53)||(9058478-9058530)
chr2 (1-53)||(30915461-30915513)
chr2 (1-52)||(5574538-5574589)
chr2 (1-48)||(28863458-28863505)
chr2 (1-52)||(33436210-33436261)
chr2 (1-51)||(40701478-40701528)
chr2 (1-53)||(10249432-10249484)
chr2 (5-48)||(19930874-19930917)
chr2 (1-52)||(32505698-32505749)
chr2 (1-51)||(13438343-13438393)
chr2 (5-51)||(27864704-27864750)
chr2 (1-51)||(28381705-28381755)
chr2 (1-55)||(38273192-38273246)
chr2 (1-51)||(40613952-40614002)
chr2 (6-55)||(20700811-20700860)
chr2 (5-54)||(38882868-38882916)
chr2 (5-50)||(41575138-41575183)
chr2 (5-51)||(4060685-4060731)
chr2 (1-54)||(26891554-26891607)
chr2 (1-56)||(13365346-13365403)
chr2 (1-55)||(42257189-42257243)
chr2 (3-52)||(2533123-2533172)
[»] chr1 (19 HSPs)
chr1 (1-54)||(2581912-2581965)
chr1 (1-51)||(9474926-9474976)
chr1 (1-57)||(38595148-38595204)
chr1 (1-51)||(3000319-3000369)
chr1 (1-51)||(47452370-47452420)
chr1 (1-56)||(8346438-8346493)
chr1 (5-52)||(41758804-41758851)
chr1 (1-52)||(51898733-51898784)
chr1 (497-563)||(14427004-14427070)
chr1 (1-51)||(27564785-27564835)
chr1 (5-51)||(48716336-48716382)
chr1 (1-54)||(32813244-32813297)
chr1 (13-53)||(38632383-38632423)
chr1 (1-51)||(37649198-37649248)
chr1 (1-51)||(50591050-50591100)
chr1 (1-54)||(23597141-23597194)
chr1 (1-57)||(5959050-5959106)
chr1 (8-52)||(50630457-50630501)
chr1 (5-53)||(26274430-26274478)
[»] chr4 (22 HSPs)
chr4 (1-56)||(480497-480552)
chr4 (1-56)||(50052478-50052533)
chr4 (1-51)||(6034044-6034094)
chr4 (1-51)||(11511512-11511562)
chr4 (7-52)||(29234301-29234346)
chr4 (1-53)||(24995157-24995209)
chr4 (1-53)||(48183099-48183151)
chr4 (5-59)||(29239878-29239932)
chr4 (1-53)||(23608233-23608285)
chr4 (1-56)||(42044417-42044472)
chr4 (1-51)||(3481654-3481704)
chr4 (5-51)||(41236347-41236393)
chr4 (1-51)||(50526221-50526271)
chr4 (1-51)||(54473583-54473633)
chr4 (4-65)||(19670769-19670830)
chr4 (1-53)||(55475189-55475241)
chr4 (1-51)||(40574779-40574829)
chr4 (1-53)||(32766956-32767008)
chr4 (1-51)||(31910192-31910242)
chr4 (1-51)||(55079764-55079814)
chr4 (3-51)||(8343215-8343263)
chr4 (1-53)||(47104542-47104594)
[»] chr7 (26 HSPs)
chr7 (1-51)||(4999564-4999614)
chr7 (3-53)||(8080435-8080485)
chr7 (1-53)||(7389387-7389439)
chr7 (2-54)||(11044185-11044237)
chr7 (1-52)||(3434561-3434612)
chr7 (1-56)||(35137528-35137583)
chr7 (1-56)||(35468905-35468960)
chr7 (1-52)||(36361963-36362014)
chr7 (10-60)||(38837208-38837258)
chr7 (1-52)||(36362025-36362076)
chr7 (1-51)||(19329842-19329892)
chr7 (1-51)||(38267040-38267090)
chr7 (1-54)||(40957704-40957757)
chr7 (1-60)||(8238203-8238263)
chr7 (1-53)||(19436237-19436289)
chr7 (1-48)||(3783998-3784045)
chr7 (1-52)||(22343360-22343411)
chr7 (1-55)||(18207176-18207230)
chr7 (1-54)||(10343613-10343666)
chr7 (3-52)||(41915740-41915789)
chr7 (5-53)||(38044195-38044243)
chr7 (4-51)||(21234401-21234448)
chr7 (1-51)||(31735884-31735934)
chr7 (1-51)||(46374852-46374902)
chr7 (9-50)||(32951551-32951592)
chr7 (1-53)||(36208171-36208223)
[»] chr8 (22 HSPs)
chr8 (1-57)||(504171-504227)
chr8 (1-51)||(1179990-1180040)
chr8 (1-51)||(12831047-12831097)
chr8 (1-51)||(15197333-15197383)
chr8 (1-51)||(34012346-34012396)
chr8 (1-53)||(14547920-14547972)
chr8 (1-57)||(43414631-43414687)
chr8 (1-56)||(5957825-5957880)
chr8 (1-56)||(16383372-16383427)
chr8 (1-52)||(37038478-37038529)
chr8 (3-53)||(4854915-4854965)
chr8 (1-51)||(20074984-20075034)
chr8 (1-51)||(23122647-23122697)
chr8 (5-51)||(40423997-40424043)
chr8 (3-51)||(15048233-15048281)
chr8 (1-53)||(34307214-34307266)
chr8 (5-56)||(30479528-30479579)
chr8 (1-52)||(44507137-44507188)
chr8 (12-50)||(9122196-9122234)
chr8 (1-54)||(10284681-10284734)
chr8 (1-46)||(10621137-10621182)
chr8 (28-56)||(34012209-34012237)
[»] chr6 (17 HSPs)
chr6 (1-48)||(22880708-22880755)
chr6 (1-51)||(32869678-32869728)
chr6 (1-56)||(17598549-17598604)
chr6 (4-55)||(31110812-31110863)
chr6 (4-54)||(6209518-6209568)
chr6 (1-51)||(29857827-29857877)
chr6 (1-54)||(30341410-30341463)
chr6 (1-53)||(15990092-15990144)
chr6 (1-52)||(11427615-11427668)
chr6 (1-51)||(15508074-15508124)
chr6 (5-51)||(31109454-31109500)
chr6 (1-51)||(31953080-31953130)
chr6 (1-60)||(15832568-15832627)
chr6 (1-52)||(31976247-31976298)
chr6 (3-57)||(946370-946424)
chr6 (1-46)||(9379762-9379807)
chr6 (28-56)||(32869837-32869865)
[»] scaffold0321 (1 HSPs)
scaffold0321 (5-60)||(10163-10218)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-51)||(4029-4079)
[»] scaffold1268 (1 HSPs)
scaffold1268 (9-51)||(987-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (9-51)||(987-1029)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 277 - 563
Target Start/End: Original strand, 7158837 - 7159123
Alignment:
Q  277 cataatttaatgtgctaaaatgtcaatatgttaaatttgatagttgatttatataaataaacatgatttggtttaatgctcttgcaatgatgcctttttc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7158837 cataatttaatgtgctaaaatgtcaatatgttaaatttgatagttgatttatataaataaacatgatttggtttaatgctcttgcaatgatgcctttttc 7158936  T
Q  377 tgttatagggtcaatttgaaattgtatccttgtttgggaatttagaagtttctgacaacaacaacgacaatataagaatgagttacttcaaggtgtctct 476  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7158937 tgttatagggtcaatttgaaattgtatccttatttgggaatttagaagtttatgacaacaacagcgacaatataagaatgagttacttcaaggtgtctct 7159036  T
Q  477 agcaaacactgattcacgccttttggaaggtgtagttgctgataagctcattgcagcatcattggtaaaggtattcctcacaaatga 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  7159037 agcaaacactgattcacgccttttggaaggtgtagttgctgataagcttattgcagcatcattggtaaaggtattgctcacaaatga 7159123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 52 - 279
Target Start/End: Original strand, 7158400 - 7158627
Alignment:
Q  52 tttttaaaacctttgtattggaatccattcaataacgcaagttatttgaatttttctatttaactctcaaacataggtaaaatatgcatcatccgaccat 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7158400 tttttaaaacctttgtattggaatccattcaataacgcaagttatttgaatttttctatttaactctcaaacataggtaaaatatgcatcatccaaccat 7158499  T
Q  152 gacaagaacaaccaatttaataattgtgtgaatgtgttgaattgtgattgtaggaaatccgaatccattgacaacatggaatggagtagcttgatatatt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7158500 gacaagaacaaccaatttaataattgtgtgaatgtgttgaattgtgattgtaggaaatccaaatccattgacaacatggaatggagtagcttgatatatt 7158599  T
Q  252 ctgctcattatttctgctatgtttgcat 279  Q
    ||||||||||||||||||||||||||||    
T  7158600 ctgctcattatttctgctatgtttgcat 7158627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49607464 - 49607410
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49607464 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctttt 49607410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11095403 - 11095455
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11095403 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 11095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 53982061 - 53982011
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53982061 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54868945 - 54868997
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  54868945 tgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 54868997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33644250 - 33644200
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  33644250 tgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52629350 - 52629305
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcat 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  52629350 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27714941 - 27714993
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
T  27714941 tgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33118901 - 33118953
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  33118901 tgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactctt 33118953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24700004 - 24700055
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  24700004 tgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31456739 - 31456684
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  31456739 tgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattacttttttt 31456684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8076443 - 8076393
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  8076443 tgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14623889 - 14623939
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  14623889 tgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 36707478 - 36707527
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    ||||||||||||||||| || |||||||| ||||||||||||||||||||    
T  36707478 tgtcaaagggtgtattgtcacctaagggtatctatgtatcattactcttt 36707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8956812 - 8956756
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttta 57  Q
    ||||||||||||| ||||||||||  ||||| |||||||||||||||||||| ||||    
T  8956812 tgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactctattta 8956756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 48587143 - 48587187
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatt 47  Q
    |||||||||||||||||||||| |||||||| |||||||||||||    
T  48587143 ggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17470455 - 17470404
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||| ||| |||||||||||| |||| ||||||||||||||||||||||    
T  17470455 tgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35536676 - 35536625
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||| ||||||||||||  ||||| ||||||||||||||||||||    
T  35536676 tgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26141582 - 26141632
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||| ||||    
T  26141582 tgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 9563045 - 9562998
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||| ||||||| ||||||| ||||| ||||||||||||||||    
T  9563045 tgtcaaaggttgtattgtcatctaatggtgtttatgtatcattactct 9562998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 36331432 - 36331479
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||| ||||| |||||||||||||||||| |||||||||| |||||    
T  36331432 tgtcaaggggtgcattgccatctaagggtgtttatgtatcataactct 36331479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 11347976 - 11348026
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    ||||||||| ||||||| || |||||| |||||||||||||| ||||||||    
T  11347976 tgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctttt 11348026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30801783 - 30801829
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatt 47  Q
    ||||| ||||||||||||||  || ||||||||||||||||||||||    
T  30801783 tgggtatcaaagggtgtattatcacctaagggtgtctatgtatcatt 30801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41080758 - 41080709
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||||||||| |||| | |||||| |||||||||||||||||||    
T  41080758 tgggtgtcaaagggtgttttgcta-ctaaggatgtctatgtatcattactc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45058603 - 45058652
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  45058603 tgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 47531903 - 47531865
Alignment:
Q  13 ggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  47531903 ggtgtattgccatctaaggatgtctatgtatcataactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 51419410 - 51419460
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| ||||| ||||||| ||||||||| |||||||||||||| ||||    
T  51419410 tgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13898105 - 13898154
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattact 50  Q
    |||||||||| ||||||||||||| |||||| ||| ||| ||||||||||    
T  13898105 tgggtgtcaaggggtgtattgccacctaaggatgtttatctatcattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 26754741 - 26754700
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcat 46  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  26754741 tgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41189814 - 41189866
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||| | |||||||||| |||||| ||| |||||||||| ||||||    
T  41189814 tgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactctt 41189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 48587042 - 48587014
Alignment:
Q  28 aagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||||||||    
T  48587042 aagggtgtctatgtatcattactcttttt 48587014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 7e-75; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 295 - 551
Target Start/End: Original strand, 4866987 - 4867255
Alignment:
Q  295 aatgtcaatatgttaaatttgatagttgatttatataaataaacatgatttggtttaatgctcttgcaatgatgcctttttct----------gttatag 384  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |          |||||||    
T  4866987 aatgtcaatatgttaaatctgatagttgatttatataaataaacataatttggtttaatgctctttcaatgatgtctttttttttttttttttgttatag 4867086  T
Q  385 ggtcaatttgaaattgtatccttgtttgggaatttagaagttt--ctgacaacaacaacgacaatataagaatgagttacttcaaggtgtctctagcaaa 482  Q
    |||||||||||||||||||||||||  || ||||||||||| |  ||||||||||| | | ||||| ||||||||||||||||||||||||||||| |||    
T  4867087 ggtcaatttgaaattgtatccttgtcaggcaatttagaagtatatctgacaacaactatggcaataaaagaatgagttacttcaaggtgtctctagtaaa 4867186  T
Q  483 cactgattcacgccttttggaaggtgtagttgctgataagctcattgcagcatcattggtaaaggtatt 551  Q
    | |||||||||||||||||| ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  4867187 ccctgattcacgccttttggtaggtgtagttgctgataagtttattgcggcatcattagtaaaggtatt 4867255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 4866635 - 4866751
Alignment:
Q  162 accaatttaataattgtgtgaatgtgttgaattgtgattgtaggaaatccgaatccattgacaacatggaatggagtagcttgatatattctg--ctcat 259  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||| ||  ||| |    
T  4866635 accaatttagtaactgtgtgaatgtgttgaattgtgattgtaggaaatccaaatccaatgacaacatggaatggagtagttggatatattatgttctcgt 4866734  T
Q  260 tatttctgctatgtttg 276  Q
    ||||||| |||||||||    
T  4866735 tatttctactatgtttg 4866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 563
Target Start/End: Original strand, 4813845 - 4814116
Alignment:
Q  293 aaaatgtcaatatgttaaatttgatagttgatttatataa--ataaacatgatttggtttaatgctcttgcaatgatgcctttttctgttatagggtcaa 390  Q
    |||||||||||||||| ||| ||||||||||||||||| |  ||||| ||| ||| |||||||||||||   | | ||  ||||| || |||||||||      
T  4813845 aaaatgtcaatatgtttaatatgatagttgatttatatgactataaatatgtttttgtttaatgctcttcatacggtgtgttttt-tgctatagggtcgg 4813943  T
Q  391 tttgaaattgtatccttgtttgggaatttagaagtttctgacaacaacaacgacaatataagaa--tgagttacttcaaggtgtctctagcaaacactga 488  Q
    ||||||||  | || ||||  || ||||||||||| |||||||||| || | | ||| ||||||  || ||||||||||||||||||| |       ||     
T  4813944 tttgaaatcatctcattgtcaggaaatttagaagtatctgacaacacca-cta-aatttaagaaaatgggttacttcaaggtgtctctcgagggtcatgg 4814041  T
Q  489 ttcacgccttttggaaggtgtagttgctgataagctcattgcagcatcattggtaaaggtattcctcacaaatga 563  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||    
T  4814042 ttcacgccttttggcaggcgtagttgctgataagcttattgcagcatcattagtaaaggtattgctctcaaatga 4814116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18520934 - 18520989
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  18520934 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattcttttt 18520989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36875653 - 36875708
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  36875653 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattacttttttt 36875708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36732992 - 36733044
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  36732992 tgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2740324 - 2740273
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  2740324 tgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14831864 - 14831809
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  14831864 tgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcatttt 14831809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33149688 - 33149738
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  33149688 tgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35785249 - 35785199
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  35785249 tgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 551
Target Start/End: Original strand, 4244623 - 4244686
Alignment:
Q  488 attcacgccttttggaaggtgtagttgctgataagctcattgcagcatcattggtaaaggtatt 551  Q
    |||||| |||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||||||    
T  4244623 attcacaccttttggcaggcgtagttgttgataagcttattgcggcatcattggtaaaggtatt 4244686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13811702 - 13811648
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    ||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||    
T  13811702 tgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactctttt 13811648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28177825 - 28177775
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  28177825 tgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 40145449 - 40145407
Alignment:
Q  9 aaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  40145449 aaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42414352 - 42414402
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  42414352 tgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3921315 - 3921368
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| |||||||    
T  3921315 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcttt 3921368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35943942 - 35943992
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| ||||    
T  35943942 tgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 26720564 - 26720516
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||| |||||||||||||||| |||||| |||||||||||||| ||||    
T  26720564 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 26990313 - 26990265
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||| |||||||||||||||| |||||| |||||||||||||| ||||    
T  26990313 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2252218 - 2252269
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||||| ||||||||||||| |||||| ||| |||||||||| |||||    
T  2252218 tgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6679748 - 6679697
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||| |||||||||||| |||| | |||||||||||||| |||||    
T  6679748 tgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 20073569 - 20073616
Alignment:
Q  4 gtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||| ||||||| | ||||||| |||||||||||    
T  20073569 gtgtcaaagggtgtattgtcatctaatgatgtctatatatcattactc 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15409660 - 15409712
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||||  ||||||| || |||||| |||||||||||||| ||||||    
T  15409660 tgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactctt 15409712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 16115273 - 16115245
Alignment:
Q  28 aagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||||||||    
T  16115273 aagggtgtctatgtatcattactcttttt 16115245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 33149579 - 33149551
Alignment:
Q  28 aagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||||||||    
T  33149579 aagggtgtctatgtatcattactcttttt 33149551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7465785 - 7465836
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7465785 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17473070 - 17473020
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17473070 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33436150 - 33436204
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33436150 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctttt 33436204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9058530 - 9058478
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9058530 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 9058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30915513 - 30915461
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30915513 tgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5574538 - 5574589
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  5574538 tgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28863505 - 28863458
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  28863505 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33436261 - 33436210
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  33436261 tgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40701528 - 40701478
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  40701528 tgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10249432 - 10249484
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  10249432 tgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactctt 10249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 19930874 - 19930917
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 48  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  19930874 tgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32505698 - 32505749
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||| ||||||||| || |||||||||||||||||||||||||||    
T  32505698 tgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13438393 - 13438343
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  13438393 tgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 27864750 - 27864704
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||    
T  27864750 tgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28381705 - 28381755
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  28381705 tgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38273192 - 38273246
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    ||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  38273192 tgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctttt 38273246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40613952 - 40614002
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  40613952 tgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 20700860 - 20700811
Alignment:
Q  6 gtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  20700860 gtcaaagggtgtattgccacataaggatgtctatgtatcattactctttt 20700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 38882868 - 38882916
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  38882868 tgtcaaagggt-tattgccacctaagggtgtctatgtatcattactcttt 38882916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 41575183 - 41575138
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattact 50  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||    
T  41575183 tgtcaaagggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 4060731 - 4060685
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||||    
T  4060731 tgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26891554 - 26891607
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    |||||||| | ||||||||||||| ||||||||| ||||||||||| |||||||    
T  26891554 tgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactcttt 26891607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13365403 - 13365346
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagg--gtgtctatgtatcattactcttttt 56  Q
    |||||||||| |||| |||||||||||||||  |||| |||||||||| |||||||||    
T  13365403 tgggtgtcaaggggtatattgccatctaagggtgtgtttatgtatcataactcttttt 13365346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42257243 - 42257189
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    ||||||||||| | |||||||||| |||| | |||||||||||||| ||||||||    
T  42257243 tgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactctttt 42257189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 2533172 - 2533123
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||| ||||||||||  ||||| |||||||||||||| |||||    
T  2533172 ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2581965 - 2581912
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2581965 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttt 2581912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9474926 - 9474976
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9474926 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38595204 - 38595148
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttta 57  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  38595204 tgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactcttttta 38595148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3000369 - 3000319
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3000369 tgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47452370 - 47452420
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  47452370 tgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8346438 - 8346493
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    ||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||    
T  8346438 tgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactcttttt 8346493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 41758851 - 41758804
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  41758851 tgtcaaagggtgtattgccatttaatggtgtctatgtatcattactct 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 51898733 - 51898784
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  51898733 tgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 497 - 563
Target Start/End: Complemental strand, 14427070 - 14427004
Alignment:
Q  497 ttttggaaggtgtagttgctgataagctcattgcagcatcattggtaaaggtattcctcacaaatga 563  Q
    |||||| ||||||||||||||||||||| ||||| ||||| || ||||||||||| ||| |||||||    
T  14427070 ttttgggaggtgtagttgctgataagcttattgcggcatccttcgtaaaggtatttctctcaaatga 14427004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27564785 - 27564835
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  27564785 tgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 48716336 - 48716382
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  48716336 tgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32813297 - 32813244
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||| |||||||    
T  32813297 tgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 32813244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 38632383 - 38632423
Alignment:
Q  13 ggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  38632383 ggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37649248 - 37649198
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||| ||||||||||| |||| | |||||||||||||||||||    
T  37649248 tgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50591050 - 50591100
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  50591050 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23597141 - 23597194
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    ||||| |||||| ||||||||||| |||| | ||||||||||||||||||||||    
T  23597141 tgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactcttt 23597194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5959050 - 5959106
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttta 57  Q
    ||||||||||  ||||||||||||  ||||||||| |||||||||| ||||||||||    
T  5959050 tgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactcttttta 5959106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 50630501 - 50630457
Alignment:
Q  8 caaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||    
T  50630501 caaaggatgtattgccacctaagggtatctatgtatcattactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 26274478 - 26274430
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||| | ||||||||||  |||||||||||||||||||||| ||||    
T  26274478 tgtcaaatgatgtattgccacataagggtgtctatgtatcattattctt 26274430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 480497 - 480552
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  480497 tgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactcttttt 480552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 50052478 - 50052533
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  50052478 tgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactcttttt 50052533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6034094 - 6034044
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6034094 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11511512 - 11511562
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11511512 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 29234301 - 29234346
Alignment:
Q  7 tcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29234301 tcaaagggtgtattgccatctaagggtgtctatgtatcattactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24995157 - 24995209
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  24995157 tgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 48183099 - 48183151
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  48183099 tgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactctt 48183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 29239932 - 29239878
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttttaaa 59  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  29239932 tgtcaaatggtgtattgccacctaagggtgtctatgtatcattactctttataaa 29239878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23608285 - 23608233
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  23608285 tgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactctt 23608233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42044417 - 42044472
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||  |||| |||||||||| |||||||||||||||||||||||||||||||    
T  42044417 tgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactcttttt 42044472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3481704 - 3481654
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  3481704 tgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 41236393 - 41236347
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  41236393 tgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50526221 - 50526271
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  50526221 tgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54473583 - 54473633
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  54473583 tgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 19670769 - 19670830
Alignment:
Q  4 gtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttttaaaaccttt 65  Q
    ||||||| ||||||||||||| |||||||||| |||||||||| |||||||| |||| ||||    
T  19670769 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcttttcaaaaacttt 19670830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 55475241 - 55475189
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||| ||||||    
T  55475241 tgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactctt 55475189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40574829 - 40574779
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| ||| |||||| |||||||||||||| ||||    
T  40574829 tgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32767008 - 32766956
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||| ||||||||||||| ||||| |||| |||||||||| ||||||    
T  32767008 tgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31910242 - 31910192
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||| |||||||| || |||||| |||||||||||||| ||||    
T  31910242 tgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 55079764 - 55079814
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  55079764 tgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 8343215 - 8343263
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| |||||||||| |||||| ||| |||||||||| ||||    
T  8343215 ggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47104594 - 47104542
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||| || |||||||| ||||||||  ||||||| |||||||||||||    
T  47104594 tgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactctt 47104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4999564 - 4999614
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4999564 tgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 8080435 - 8080485
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8080435 ggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7389439 - 7389387
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  7389439 tgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactctt 7389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 11044237 - 11044185
Alignment:
Q  2 gggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactcttt 11044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3434612 - 3434561
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  3434612 tgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35137583 - 35137528
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  35137583 tgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactcatttt 35137528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35468905 - 35468960
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  35468905 tgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactcttttt 35468960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36361963 - 36362014
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  36361963 tgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 38837258 - 38837208
Alignment:
Q  10 aagggtgtattgccatctaagggtgtctatgtatcattactctttttaaaa 60  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  38837258 aagggtgtattgccacctaagggtgtctatgtatcattactcttttgaaaa 38837208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36362076 - 36362025
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  36362076 tgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19329892 - 19329842
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  19329892 tgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38267090 - 38267040
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  38267090 tgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40957757 - 40957704
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    ||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  40957757 tgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactcttt 40957704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8238263 - 8238203
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatcta-agggtgtctatgtatcattactctttttaaaa 60  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||| |||| ||||||||    
T  8238263 tgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactcattttaaaa 8238203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19436237 - 19436289
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||||||    
T  19436237 tgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3784045 - 3783998
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 48  Q
    ||||||||||| | |||||||||| |||||||||||||||||||||||    
T  3784045 tgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22343411 - 22343360
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| |||||    
T  22343411 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 18207230 - 18207176
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    ||||||||||  |||||||||||| |||||| |||||||||||||| ||||||||    
T  18207230 tgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctttt 18207176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10343613 - 10343666
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    ||||||||||   ||||||| ||| |||||||||||||||||||||||||||||    
T  10343613 tgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactcttt 10343666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 41915789 - 41915740
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||| ||||||||||||| |||||||||| |||||||||| |||||    
T  41915789 ggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 38044243 - 38044195
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||| ||||||||||||| |||||||||| |||||||||| ||||||    
T  38044243 tgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 21234448 - 21234401
Alignment:
Q  4 gtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||| || |||||| |||||||||||||| ||||    
T  21234448 gtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31735934 - 31735884
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| |||| ||||||||||| |||||| |||||||||||||| ||||    
T  31735934 tgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactc 31735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46374852 - 46374902
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| ||||||||| |||||| |||||| |||||||||||||| ||||    
T  46374852 tgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 32951551 - 32951592
Alignment:
Q  9 aaagggtgtattgccatctaagggtgtctatgtatcattact 50  Q
    ||||| ||||||| |||||||| |||||||||||||||||||    
T  32951551 aaaggatgtattgtcatctaagagtgtctatgtatcattact 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36208223 - 36208171
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||| |  |||||| ||| ||||||||||||||||||||| ||||||    
T  36208223 tgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactctt 36208171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 504171 - 504227
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttta 57  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  504171 tgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcatttta 504227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1179990 - 1180040
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1179990 tgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12831097 - 12831047
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  12831097 tgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15197383 - 15197333
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  15197383 tgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34012346 - 34012396
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  34012346 tgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14547972 - 14547920
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||    
T  14547972 tgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactctt 14547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43414631 - 43414687
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttta 57  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||    
T  43414631 tgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactcatttta 43414687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5957880 - 5957825
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||||| |||||    
T  5957880 tgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattacttttttt 5957825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16383427 - 16383372
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| |||||||||    
T  16383427 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcttttt 16383372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37038529 - 37038478
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  37038529 tgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 4854915 - 4854965
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  4854915 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactctt 4854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20074984 - 20075034
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  20074984 tgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 23122647 - 23122697
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  23122647 tgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 40423997 - 40424043
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  40423997 tgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 15048233 - 15048281
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  15048233 ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34307266 - 34307214
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| ||||||    
T  34307266 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 30479528 - 30479579
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||| ||||    
T  30479528 tgtcaaagggtgtattgccacctaagggtgtttatgtatcataactcctttt 30479579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44507137 - 44507188
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||| |||| ||||||| ||| |||||||||||||||||||||||||||    
T  44507137 tgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 9122234 - 9122196
Alignment:
Q  12 gggtgtattgccatctaagggtgtctatgtatcattact 50  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  9122234 gggtgtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10284681 - 10284734
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    |||||||||||| |||||||| ||  |||||||||||||||||||| |||||||    
T  10284681 tgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactcttt 10284734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10621137 - 10621182
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcat 46  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||    
T  10621137 tgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 34012237 - 34012209
Alignment:
Q  28 aagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||||||||    
T  34012237 aagggtgtctatgtatcattactcttttt 34012209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22880708 - 22880755
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  22880708 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32869728 - 32869678
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  32869728 tgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17598604 - 17598549
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttt 56  Q
    ||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||    
T  17598604 tgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactcatttt 17598549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 31110812 - 31110863
Alignment:
Q  4 gtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttt 55  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  31110812 gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctttt 31110863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 6209518 - 6209568
Alignment:
Q  4 gtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  6209518 gtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactcttt 6209568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29857877 - 29857827
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  29857877 tgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30341410 - 30341463
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttt 54  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| |||||||    
T  30341410 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcttt 30341463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15990092 - 15990144
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctt 53  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| ||||||    
T  15990092 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 15990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11427668 - 11427615
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaag--ggtgtctatgtatcattactct 52  Q
    ||||||||||||| |||||||||| |||||  ||||||||||||||||||||||    
T  11427668 tgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactct 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15508074 - 15508124
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  15508074 tgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 31109454 - 31109500
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||    
T  31109454 tgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31953080 - 31953130
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||| ||||||||||||| |||||| ||||||| |||||||||||    
T  31953080 tgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15832627 - 15832568
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttttaaaa 60  Q
    ||||||||||| | | ||||| || |||| ||||||||||||||||||||||||| ||||    
T  15832627 tgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactcttttgaaaa 15832568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31976298 - 31976247
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 52  Q
    ||||||| ||||||| |||||||| |||||| |||||||||||||| |||||    
T  31976298 tgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 946424 - 946370
Alignment:
Q  3 ggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcttttta 57  Q
    ||||||||||||||||||  || |||||| |||||||||||| ||||| ||||||    
T  946424 ggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgttacttttttta 946370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9379762 - 9379807
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcat 46  Q
    |||||||||| || ||||||| ||||||||| ||||||||||||||    
T  9379762 tgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 32869837 - 32869865
Alignment:
Q  28 aagggtgtctatgtatcattactcttttt 56  Q
    |||||||||||||||||||||||||||||    
T  32869837 aagggtgtctatgtatcattactcttttt 32869865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 10163 - 10218
Alignment:
Q  5 tgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctttttaaaa 60  Q
    ||||||||| |||||||||| |||| |||||||||||||||| |||||||||||||    
T  10163 tgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactctttttaaaa 10218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4079 - 4029
Alignment:
Q  1 tgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  4079 tgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 987 - 1029
Alignment:
Q  9 aaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 987 - 1029
Alignment:
Q  9 aaagggtgtattgccatctaagggtgtctatgtatcattactc 51  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University