View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20582_low_6 (Length: 540)
Name: NF20582_low_6
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Complemental strand, 1030580 - 1030072
Alignment:
| Q |
16 |
acctccttgacgaacccggaccctctacaaccgtctgcagacagttgcaccgtaaaacagctatagaggacccaaacttgctatctgacccaaaataaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1030580 |
acctccttgacgaacccggaccctctacaaccgtctgcagacagttgccccgtaaaatggctatagaggacccaaacttgctatctgacccaaaataaaa |
1030481 |
T |
|
| Q |
116 |
ctctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagataca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1030480 |
ctctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctaatccacctaactgcatcttcctttgaaacctcattttctttagataca |
1030381 |
T |
|
| Q |
216 |
atttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1030380 |
atttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccac |
1030281 |
T |
|
| Q |
316 |
tgtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaaggacaccatt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1030280 |
tgtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaagtacaccatt |
1030181 |
T |
|
| Q |
416 |
gttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacagccaaagaagaacataattggagcagtggaaatagtttta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1030180 |
gttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacagccaaagaagaacataattggagcagtggaaatagtttta |
1030081 |
T |
|
| Q |
516 |
ctttgcaat |
524 |
Q |
| |
|
||||||||| |
|
|
| T |
1030080 |
ctttgcaat |
1030072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 117 - 524
Target Start/End: Complemental strand, 40833072 - 40832665
Alignment:
| Q |
117 |
tctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
40833072 |
tctcaagaccatgcttcaatgtgatatttaccacacttttctaatgccctaatccatctaactgcatcttcttttgaaacatcattttctttagatacaa |
40832973 |
T |
|
| Q |
217 |
tttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccact |
316 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||| |
|
|
| T |
40832972 |
tttcctcaaaagctgatgttacatctgtaggcattttggttaatgaacctgctatataaacagaagctccctcagctaataagttccaaacccttccact |
40832873 |
T |
|
| Q |
317 |
gtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaaggacaccattg |
416 |
Q |
| |
|
||||||| ||| |||||||||||||||||| || || |||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
40832872 |
gtgttccctcaacttatgctgaacataaaccttttctggctggtctctagagaaagcaacatagaaacctccacctgttgattctgaaagcacaccattg |
40832773 |
T |
|
| Q |
417 |
ttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacagccaaagaagaacataattggagcagtggaaatagttttac |
516 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
40832772 |
ttctgtgaatgattcaaccagaagtctttgtataaaaagtctccatcttcattccaacagccaaagaagaatataattggagcaatggaaatagttttac |
40832673 |
T |
|
| Q |
517 |
tttgcaat |
524 |
Q |
| |
|
|||||||| |
|
|
| T |
40832672 |
tttgcaat |
40832665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Complemental strand, 46554170 - 46553662
Alignment:
| Q |
16 |
acctccttgacgaacccggaccctctacaaccgtctgcagacagttgcaccgtaaaacagctatagaggacccaaacttgctatctgacccaaaataaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46554170 |
acctccttgacgaacccggaccctctacaaccgtctgcagacagttgctccgtaaaatggctatagaggacccaaacttgctatctgacccaaaataaaa |
46554071 |
T |
|
| Q |
116 |
ctctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagataca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46554070 |
ctctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctaatccacctaactgcatcttcctttgaaacctcattttctttagataca |
46553971 |
T |
|
| Q |
216 |
atttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46553970 |
atttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccac |
46553871 |
T |
|
| Q |
316 |
tgtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaaggacaccatt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46553870 |
tgtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaagtacaccatt |
46553771 |
T |
|
| Q |
416 |
gttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacagccaaagaagaacataattggagcagtggaaatagtttta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46553770 |
gttctgtgaatgattcaaccacaagtctttgtataaaaagtcaccgtcttcattccaacagccaaagaagaacataattggagcagtggaaatagtttta |
46553671 |
T |
|
| Q |
516 |
ctttgcaat |
524 |
Q |
| |
|
||||||||| |
|
|
| T |
46553670 |
ctttgcaat |
46553662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University