View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20582_low_7 (Length: 508)
Name: NF20582_low_7
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 38252464 - 38252962
Alignment:
| Q |
1 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252464 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
38252563 |
T |
|
| Q |
101 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252564 |
tagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
38252663 |
T |
|
| Q |
201 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252664 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
38252763 |
T |
|
| Q |
301 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252764 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
38252863 |
T |
|
| Q |
401 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252864 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
38252962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 43157078 - 43156580
Alignment:
| Q |
1 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157078 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
43156979 |
T |
|
| Q |
101 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156978 |
tagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
43156879 |
T |
|
| Q |
201 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156878 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
43156779 |
T |
|
| Q |
301 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156778 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
43156679 |
T |
|
| Q |
401 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156678 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
43156580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 11474402 - 11473904
Alignment:
| Q |
1 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11474402 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttctttatgaatttgtttttgaaattaccat |
11474303 |
T |
|
| Q |
101 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474302 |
tagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
11474203 |
T |
|
| Q |
201 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474202 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaattaaaacaagtactttaaataacaactcatatacctgtgaacttt |
11474103 |
T |
|
| Q |
301 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474102 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
11474003 |
T |
|
| Q |
401 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474002 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
11473904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 28245649 - 28246132
Alignment:
| Q |
1 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245649 |
cccctctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
28245748 |
T |
|
| Q |
101 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245749 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaaaacaagatactccatcaacctaaaatgattatgtc |
28245848 |
T |
|
| Q |
201 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245849 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
28245948 |
T |
|
| Q |
301 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
400 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28245949 |
tttctttaggtgg---------------agcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggttgtaccctgaa |
28246033 |
T |
|
| Q |
401 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28246034 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgcccgaagttcaattattttctt |
28246132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 238 - 462
Target Start/End: Original strand, 50019454 - 50019678
Alignment:
| Q |
238 |
tcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcgact |
337 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
50019454 |
tcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttctttacgtggagcgcaactagatgtagcgcgact |
50019553 |
T |
|
| Q |
338 |
atgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaacccctttgcttgcataaaatccaaactcacaacttct |
437 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||| |
|
|
| T |
50019554 |
ttgctggttttccagaaaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaacccctttgcttgcagaacatctgaactcacaatttct |
50019653 |
T |
|
| Q |
438 |
ggacgagcaccattatcaccgttat |
462 |
Q |
| |
|
| |||| |||||||||||||||||| |
|
|
| T |
50019654 |
gaacgaccaccattatcaccgttat |
50019678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 50019141 - 50019363
Alignment:
| Q |
4 |
ccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattag |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
50019141 |
ccctattgcctacattaataacaacttaaaaattagaatcacgatacttgttaaatgtatgaatagttccttatgaatttgcttttgaaattaccattag |
50019240 |
T |
|
| Q |
104 |
catggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtagg---cgcagaacaagatactccatcaacctaaaatgattatgtc |
200 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50019241 |
catgacaatgtaattgacttgatcctcatgtgcttgtgggggctcataagttggaggcgacgcagaacaagatactccatcaaactaaaatgattatgta |
50019340 |
T |
|
| Q |
201 |
aaattattaagctaagatacatg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
50019341 |
aaattattaagctaagatacatg |
50019363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 10465011 - 10465068
Alignment:
| Q |
128 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
185 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
10465011 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccatcaacc |
10465068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 43734663 - 43734720
Alignment:
| Q |
128 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
185 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
43734663 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccatcaacc |
43734720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 50673558 - 50673599
Alignment:
| Q |
144 |
ggctcataagttgtaggcgcagaacaagatactccatcaacc |
185 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
50673558 |
ggctcataagttggaggcgcggaacaagatactccatcaacc |
50673599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 19307326 - 19307824
Alignment:
| Q |
1 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307326 |
cccctctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
19307425 |
T |
|
| Q |
101 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307426 |
tagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaaaacaagatactccatcaacctaaaatgattatgtc |
19307525 |
T |
|
| Q |
201 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307526 |
aaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaaataaaacaagtactttaaataacaactcatatacctgtgaacttt |
19307625 |
T |
|
| Q |
301 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307626 |
tttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccaaacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctgaa |
19307725 |
T |
|
| Q |
401 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19307726 |
cccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgcccgaagttcaattattttctt |
19307824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10123876 - 10124078
Alignment:
| Q |
1 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10123876 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcaatatgaatttgtttttgaaattaccat |
10123975 |
T |
|
| Q |
101 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgtc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10123976 |
tagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcataacaagatactccatcaacctaaaatgattatgtc |
10124075 |
T |
|
| Q |
201 |
aaa |
203 |
Q |
| |
|
||| |
|
|
| T |
10124076 |
aaa |
10124078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 422 - 499
Target Start/End: Original strand, 10124075 - 10124152
Alignment:
| Q |
422 |
caaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10124075 |
caaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgcccgaagttcaattattttctt |
10124152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 25382516 - 25382017
Alignment:
| Q |
1 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25382516 |
cccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttccttatgaatttgtttttgaaattaccat |
25382417 |
T |
|
| Q |
101 |
tagcatggttgtgtaattgacttgagactcatgtgcttgtgggggc-tcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgt |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382416 |
tagcatggctgtgtaattgacttgagacttatgtgcttgtggggggatcataagttgtaggcgcagaacaagatactccatcaacctaaaatgattatgt |
25382317 |
T |
|
| Q |
200 |
caaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaactt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25382316 |
caaattattaagctaagatacatgtaaaattatggcagtcaccaaaacaagtaaaattaaaacaagtactttaaataccaactcatatacctgtgaactt |
25382217 |
T |
|
| Q |
300 |
ttttctttaggtggagcgcgcctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccctga |
399 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25382216 |
ttttctttaggtggagcgcggctagatgtagcgcgactatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtaccttga |
25382117 |
T |
|
| Q |
400 |
acccctttgcttgcataaaatccaaactcacaacttctggacgagcaccattatcaccgttattgtccatagcttgtgtccgaagttcaattattttctt |
499 |
Q |
| |
|
|||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
25382116 |
acccctttgcttgcataacattcgaactcacaatttctggacgagcaccattatcaccgttattgtccatagcttgtgcccgaaattcaattattttctt |
25382017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 48794334 - 48794161
Alignment:
| Q |
12 |
cctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcatggttg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
48794334 |
cctacattaataacaacttaaaaattagcatcacgatacatgttaaatgtatgtatagttccttatgaatttgtttttgaaattaccatcagcatggctg |
48794235 |
T |
|
| Q |
112 |
tgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
185 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
48794234 |
tgtaattgaattgatcctcatgtgcttgtgggggcgcataagttggaggtgcagaacaagatactccatcaacc |
48794161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 48794140 - 48794087
Alignment:
| Q |
182 |
aacctaaaatgattatgtcaaattattaagctaagatacatgtaaaattatggcagt |
238 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||||| |||||||| |
|
|
| T |
48794140 |
aacctaaaatgattatgtaaaatta---aactaagatacatgtaaaatcatggcagt |
48794087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 25862800 - 25862743
Alignment:
| Q |
128 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccatcaacc |
185 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
25862800 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccatcaacc |
25862743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 27979145 - 27979093
Alignment:
| Q |
128 |
ctcatgtgcttgtgggggctcataagttgtaggcgcagaacaagatactccat |
180 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
27979145 |
ctcacgtgctagcgggggctcataagttggaggcgcggaacaagatactccat |
27979093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 5911543 - 5911504
Alignment:
| Q |
141 |
gggggctcataagttgtaggcgcagaacaagatactccat |
180 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5911543 |
gggggctcataagttggaggcgcggaacaagatactccat |
5911504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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