View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20582_low_8 (Length: 496)
Name: NF20582_low_8
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 4358003 - 4358311
Alignment:
| Q |
9 |
gaagaatatgtataagcctaaatcacatgtttgtcaattttgactagcatgtactttatttttaggtgtaataaaatagtgtgtgaaatt---------- |
98 |
Q |
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| T |
4358003 |
gaagaacatgtataagcctaaatcacatgtttgtcgattttgactagcatgtactttatttttaggtgtaataaaatagtgtgtgaaattgcaaattaat |
4358102 |
T |
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| Q |
99 |
-gcaaaccaagtctgtcctctattgatatccgactaaaatgtattaaattagtaatgtcaaagatgtatttcaagtttcaactcaagtgatattagtgat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358103 |
tgcaaaccaagtctgtcctctattgatatccgactaaaatgtattaaattagtaacgtcaaagatgtatttcaagtttcaactcaagtgatattagtgat |
4358202 |
T |
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| Q |
198 |
gcatttgataacagatgatttagacatgaagacaaatctgatatattttgcaattttagatcatcattatagaattgtgataatgtaaagtaccattatg |
297 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
4358203 |
gcatttgataaaagatgatttagacatgaagacaaatctgatatattttgcaattttagatcatcattagagaattgtgataatgtaaagtacaattatg |
4358302 |
T |
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| Q |
298 |
ttgttatga |
306 |
Q |
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||||||||| |
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| T |
4358303 |
ttgttatga |
4358311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 292 - 496
Target Start/End: Original strand, 4358335 - 4358539
Alignment:
| Q |
292 |
attatgttgttatgaccctacaatttcaagaactaataaattgaacatttactcataatacactaaagaagtcataatccttagcaacgtgagtgttctt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358335 |
attatgttgttatgaccctacaatttcaagaactaataaattgaacatttactcataatacactaaagaagtcataatccttagcaacgtgagtgttctt |
4358434 |
T |
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| Q |
392 |
aaggattatataatctcttccccctctacttggagtactcatcccacatctttcttcaaaacattgaagcatcggacaggttgataacaaatggggtgta |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358435 |
aaggattatataatctcttccccctctacttggagtactcatcccacatctttcttcaaaacattgaagcatcggacaggttgataacaaatggggtgta |
4358534 |
T |
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| Q |
492 |
ggagc |
496 |
Q |
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||||| |
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| T |
4358535 |
ggagc |
4358539 |
T |
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