View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20582_low_9 (Length: 490)
Name: NF20582_low_9
Description: NF20582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20582_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 7089503 - 7089776
Alignment:
| Q |
157 |
ttttaacaactacatacttcatttgattcaaagagaagtcttagtattattttacaaaaattccaacaaaattttgttaccaaatagagagtaatttcat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089503 |
ttttaacaactacatacttcatttgattcaaagagaagtcttagtattattttaaaaaaattccaacaaaattttgttaccaaatagagagtaatttcat |
7089602 |
T |
|
| Q |
257 |
gtgagcactacaatcttaccagggcttagaccaagatataaactatatgtagaagtagccctttccctcttgataaaacactgaattggattgtctcttg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7089603 |
gtgagcactacaatcttaccagggcttagaccaagatataaactatatgtagaagtagccctttccctcttaataaaacactgaattggattgtctcttg |
7089702 |
T |
|
| Q |
357 |
gaccaggctgaaaaacaaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089703 |
gaccaggctgaaaaacaaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
7089776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 7669346 - 7669606
Alignment:
| Q |
170 |
atacttcatttgattcaaagagaagtcttagtattattttacaaaaattccaacaaaattttgttaccaaatagagagtaatttcatgtgagcactacaa |
269 |
Q |
| |
|
|||||| ||||||||||||||||| ||| || | |||||| |||||| | ||||||||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
7669346 |
atacttaatttgattcaaagagaaaccttggtgtgattttagaaaaatccaaacaaaattttgttatcaaatagagaataatttcatgtgagcacaacaa |
7669445 |
T |
|
| Q |
270 |
tcttaccagggcttagaccaagatataaactatatgtagaagtagccctttccctcttgataaaacactgaattggattgtctcttggaccaggctgaaa |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7669446 |
tcttaccagggcttagaccaagatataaactatatgtagaagtcgccctttctctcttgataaaacactgaattggattgtctcttggacaaggctgaaa |
7669545 |
T |
|
| Q |
370 |
aacaaaataaaggacaaagtaattacacatttagtaccttacaccatgtgcttccaagctt |
430 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7669546 |
aacaaaataaaagacaaagtaataacacatttagtaccatacaccatgtgcttccaagctt |
7669606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 7089339 - 7089245
Alignment:
| Q |
68 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaa |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7089339 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaa |
7089245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 7668740 - 7668587
Alignment:
| Q |
3 |
aaatagtctcttaactattctcaatctatgaagttagtagctaaattatctcttaacttagtgaattgtgttattgtatttgcagctctttctggtgata |
102 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||| ||||| || | | ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7668740 |
aaatagtctataaactattctcgatctatgaagttagtctctaaactacc----atctttgtgaattgtgttattgtatttgcagctctttctggtgat- |
7668646 |
T |
|
| Q |
103 |
tgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaa |
162 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
7668645 |
-gagcaaacttctcttggctgcaaagaagattagaagagcaacatgcacaaattttttaa |
7668587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7089370 - 7089340
Alignment:
| Q |
1 |
acaaatagtctcttaactattctcaatctat |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7089370 |
acaaatagtctcttaactattctcaatctat |
7089340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University