View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_high_2 (Length: 710)
Name: NF20583_high_2
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_high_2 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 587 - 710
Target Start/End: Original strand, 39406466 - 39406592
Alignment:
| Q |
587 |
ttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaa---aacaacaacaatgattaagatctagcttccttgaggatg |
683 |
Q |
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| T |
39406466 |
ttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaacctccaaaacaacaacaacaatgattaaaatctagcttccttgaggatg |
39406565 |
T |
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| Q |
684 |
aagatcccaaaacaacaacaactatga |
710 |
Q |
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| T |
39406566 |
aaggtcccaaaacaacaatgactatga |
39406592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 39406376 - 39406420
Alignment:
| Q |
470 |
ggaaaatgatatttagtacggcacttttccatacgaatattcacg |
514 |
Q |
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| T |
39406376 |
ggaaaatgatatttaatacgacacttttgcatacgaatattcacg |
39406420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 582 - 710
Target Start/End: Original strand, 50430704 - 50430832
Alignment:
| Q |
582 |
accacttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaacaacaacaatgattaagatctagcttccttgagga |
681 |
Q |
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| T |
50430704 |
accacttttaagttttatcttcacttcctcattctctcctactttatgcaataaaacatccaaaacaacaacaacgattaagatttagcttctttgagga |
50430803 |
T |
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| Q |
682 |
tgaagatcccaaaacaacaacaactatga |
710 |
Q |
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| T |
50430804 |
tcaagttcccaaaacaacaacgactatga |
50430832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 294 - 407
Target Start/End: Original strand, 40273321 - 40273435
Alignment:
| Q |
294 |
cattggaacaatgaagagcgagaccaaatggagtaaattagatt-ataaatccaaggatatatttgattctctaatgacagaaataacaaagacgtatgt |
392 |
Q |
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| T |
40273321 |
cattagaacaatgaagagggagacgaaatgaagtaaatgagatttataaattcaaggatatagtttactctctaacaacagaaataacaaagacatccgt |
40273420 |
T |
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| Q |
393 |
ggtgaaaaataaaag |
407 |
Q |
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| T |
40273421 |
ggtgaaaaataaaag |
40273435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 529
Target Start/End: Original strand, 50430574 - 50430647
Alignment:
| Q |
458 |
tataaaaaataa--ggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacat |
529 |
Q |
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| T |
50430574 |
tataaaaaataataggaaaatgatatttggtacgggagttttgcatacgaaaattcaaggacgcgtgaaaacat |
50430647 |
T |
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Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 634 - 710
Target Start/End: Complemental strand, 21672584 - 21672508
Alignment:
| Q |
634 |
aaaagctccaaaacaacaacaatgattaagatctagcttccttgaggatgaagatcccaaaacaacaacaactatga |
710 |
Q |
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| T |
21672584 |
aaaacctccaaaacaagaacaatgattaagatctagcttctttgaggttgaagatcccaaaacaacagcgactatga |
21672508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 21672637 - 21672580
Alignment:
| Q |
470 |
ggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaac |
527 |
Q |
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| T |
21672637 |
ggaaaatgatatttagtacaggaattttgcatacggatattcacggatgcctgaaaac |
21672580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 546
Target Start/End: Original strand, 42085514 - 42085598
Alignment:
| Q |
462 |
aaaaataaggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg |
546 |
Q |
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| T |
42085514 |
aaaaacaaggaaaatgatatttgttacgagagatttgcatacgaaaattcacagatgtttaaaaacatgcaatttcaacgtgctg |
42085598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 546
Target Start/End: Original strand, 9221983 - 9222061
Alignment:
| Q |
468 |
aaggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg |
546 |
Q |
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| T |
9221983 |
aaggaaaatgatatttgttacgggagatttgcatacgaaaatttacggatgtttgaaaacatgcaatttcaacgtgctg |
9222061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 546
Target Start/End: Complemental strand, 58752 - 58674
Alignment:
| Q |
468 |
aaggaaaatgatatttagtacggcacttttccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg |
546 |
Q |
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|||||||||||||||| ||||| | ||| |||||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
58752 |
aaggaaaatgatatttgttacgggagatttgcatacgaaaattcacggatgtttaaaaacatgcaatttcaacgtgctg |
58674 |
T |
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