View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_high_3 (Length: 554)
Name: NF20583_high_3
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 43363403 - 43363927
Alignment:
| Q |
19 |
acaatggttcttcaattgtataannnnnnnacatgtacatacaaacacactaca-aagcaatcacattaagatagaacagcattgtatggaatggccact |
117 |
Q |
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| T |
43363403 |
acaatggttcttcaattgtatcatttttttacatgtacatacaaacacactacacaaacaatcacattaagatagaacagcattgtatggaatggccact |
43363502 |
T |
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| Q |
118 |
tctgctgcccctatggctatcctgtcctattcataaaaagaatcccttatcaaaccttcccacaaatttcagtttcagaagcttcagcatattagtggcc |
217 |
Q |
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| T |
43363503 |
tctgctgcccctatggctatcctgtcctattcataaacagaatcccttatcaaaccttcccacaaatttcagtttcaaaagcttcggcatattagtggcc |
43363602 |
T |
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| Q |
218 |
tatatatacagttgccacaagcctacaatctacattttgaagcagcttctcatacaaaatctaataaactatatacaaaggcttaattttcagtactgtt |
317 |
Q |
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| T |
43363603 |
tatatatacagttgccacaagcctacaatctacattttgaagcagcttctcatacaaaatctaataaactatatacaaaggcttaattttcagtactgtt |
43363702 |
T |
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| Q |
318 |
tgaagatcttattcttatcagtgcaagaagagggaaaagcaagcagagagaagttgctagaattcgaacatctaatctgagaagaatacttgcacttcag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43363703 |
tgaagatcttattcttatcagtgcaagaagagggaaaagcaagcagggagaagttgctagaattcgaacatctaatctgagaagaatacttgtacttcag |
43363802 |
T |
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| Q |
418 |
cttggtcagtacccattagaagggggagcgaatcaatattagttcctttgagctgaacctgctttctataattgtccaaatcataatctaattcagacca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43363803 |
cttggtcagtacccattagaagggggagcgaatcaatattagttcctttgagctgaacctgctttctataattgtccaaatcataatctaattcagacca |
43363902 |
T |
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| Q |
518 |
ctcccgttcttcctcagcaggcttc |
542 |
Q |
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| T |
43363903 |
ctcccgttcttcctcagcaggcttc |
43363927 |
T |
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