View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_high_6 (Length: 436)
Name: NF20583_high_6
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 190 - 421
Target Start/End: Complemental strand, 4604984 - 4604753
Alignment:
| Q |
190 |
ggcatcaataaggtttgggccggttctcgcttcgctgttcctataaaggccgcggctgtttttagttctaattatgatgacagttctgagctaagccgga |
289 |
Q |
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| T |
4604984 |
ggcatcaataagtgttgggccggttctcgcctttctgttccaataaaggccgcagctgttattagtacgacatatgatgacagttctgagctaagtcgga |
4604885 |
T |
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| Q |
290 |
gcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtgtgttgatgtgcatgaggtgtatgttact |
389 |
Q |
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| T |
4604884 |
gcagtttcccggaaggttttgtttttggtactggctcctccaattaccaggtacattttgtaacattgtgtgtgttggtgtgcatgaggtgtatgttact |
4604785 |
T |
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| Q |
390 |
atacatatggatatatgaataatcattgtttc |
421 |
Q |
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|||||| |||| |||||||||||||||||||| |
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| T |
4604784 |
atacatgtggaaatatgaataatcattgtttc |
4604753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 4627389 - 4627289
Alignment:
| Q |
262 |
tatgatgacagttctgagctaagccggagcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtg |
361 |
Q |
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|||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4627389 |
tatgctgatagttttgagctaaatcggagcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtg |
4627290 |
T |
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| Q |
362 |
t |
362 |
Q |
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| T |
4627289 |
t |
4627289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 4605161 - 4605118
Alignment:
| Q |
13 |
aatataaaagtagaagtatataaagataaacaaattgacatgcc |
56 |
Q |
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| T |
4605161 |
aatataaaagtagaagtatataaagataaaccaattgacatgcc |
4605118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 18792973 - 18793039
Alignment:
| Q |
263 |
atgatgacagttctgagctaagccggagcagttttccggaaggttttgtttttggtactggctcctc |
329 |
Q |
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|||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||| ||||||| |||||| |
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| T |
18792973 |
atgatgacagttctgatctaagtcggagtagttttccgaaaggtttcgttttcggtactgcctcctc |
18793039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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