View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_1 (Length: 801)
Name: NF20583_low_1
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 697
Target Start/End: Complemental strand, 43775729 - 43775041
Alignment:
| Q |
8 |
gacatcatcaaaatctacggcatcacatcacggagctatgaaa-ggataaatttgcaatagtacgttatatttggctgttgaatgatgcttgggttgcat |
106 |
Q |
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|||||||| | ||||||| |||||||||||| ||||||||| ||||||||||| |||||| | |||||||| ||| | | |||||||||||||||| |
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| T |
43775729 |
gacatcattagaatctactacatcacatcacgatgctatgaaatggataaatttgtaatagtgcattatattttgctctgcagggatgcttgggttgcat |
43775630 |
T |
|
| Q |
107 |
aacactgacattttcatctaaaaatatatctatttggaaaccaatgccgaatctcaaacaaacaaaattttcatttagaaaactaccaagcatatcattg |
206 |
Q |
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| |||| ||||||| |||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||| |||| |
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| T |
43775629 |
gatactggcattttcgtctaaagatatatctgtttgaaaaccaatgccaaatctcaaacaaacaaaattttcatttagaaaattactaatcatataattg |
43775530 |
T |
|
| Q |
207 |
ttaacttaagtaaatttagaagacaaaagatgcagggaactcacatactgcgttgcaatacaatgtcatgcatgctaaacacttacaaggatgatttttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43775529 |
ttaacttaagtaaatttagaagacaaaagatgcagggaacccatatgctgcgttgcaatacaatgccatgcatgctaaacacttacaaggatgatttttg |
43775430 |
T |
|
| Q |
307 |
tttcgtccaactccctctagattttcaacaacttatcagcctctgcagggtcctggagatttgacaggaacatagaatgggggtttgagtgaaa-agtca |
405 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
43775429 |
tttcgtccaactccctctggattttcaacaacttatcagcctctgcagggtcctggagatttgacaggaacataaaatgggggtttgagtgaaacagtca |
43775330 |
T |
|
| Q |
406 |
tcatgtgaaaggttgccagaagnnnnnnnnnnttattcaaagcaattgtgaatattatacacttatttaatgtaaattcaacaattgctctagctaaagt |
505 |
Q |
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| T |
43775329 |
tcatgtgaaagggtgtcaaaa--agaaaaaatttatttgaagcaattgtgaatattatacacttctttaatgtaaattcaactattattctagctaaagc |
43775232 |
T |
|
| Q |
506 |
caatataatgaagaggcatttacatgcctggaattttgtgagagcttcattcaaatagggccatggttgagtactgtcttcctgagtgcttctccatgat |
605 |
Q |
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| T |
43775231 |
caatataaagcataggcatttacatgcctggaatttcgcaagagcttcattcaaatagggccatggttcagtactgtctgcctgaatgcttctccatgat |
43775132 |
T |
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| Q |
606 |
tcagcaaaacttttaatatactcatccagcacctgcaggacatcatattttattaccatctagtaaaaccagttaaataacatgcatcagat |
697 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
43775131 |
tcaccaaaacttttaatatattcatccagcacctgcaggacatcatattttataaccatctagtaaaa-caattaaataacatgcatcagat |
43775041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 697 - 770
Target Start/End: Complemental strand, 43775014 - 43774941
Alignment:
| Q |
697 |
tattcttatccgccacccaaacatacgggaacttaaagccgtaggcagagttgcttcgacatataaagacaaat |
770 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43775014 |
tattcttatccaccacccaaacatacaggaatttaaagccgtaggcggagttgcttcgacatataaagacaaat |
43774941 |
T |
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