View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_13 (Length: 329)
Name: NF20583_low_13
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 52610183 - 52609911
Alignment:
| Q |
22 |
gtcttgacttcccccaaatgggttactctactctcttcactctcatattcttgcccaaatcgtaagaagatgacttggccaaactcttaccttcatgcat |
121 |
Q |
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| T |
52610183 |
gtcttgacttcccc-aaatgggttactctactctcttcactctcatattcttgcccaaatcataagaagatgacttggccaaactcttaccttcacaaat |
52610085 |
T |
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| Q |
122 |
ggcttgacactctacctccactcaagaaatctcacaaaacaatcaacgataaggtaagtaagccataattgtaacctctcttcctttctcaaatcactcg |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52610084 |
ggcttgacactctacctccactcaagaaatctcacaaaacaatcaacgataaggtaagtaagccatagttgtaacctctcttcctttctcaaatcactcg |
52609985 |
T |
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| Q |
222 |
ttaccctcaaaagtaaacnnnnnnngggggaagaagaaaaacgtaccttcgatcaagaataacaacaatttctc |
295 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
52609984 |
ttaccctcaaacgtaaacaaaaaaagggggaagaagaaaaacgtaccttcaatcaagaataacaataatttctc |
52609911 |
T |
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