View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_15 (Length: 304)
Name: NF20583_low_15
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 39406466 - 39406753
Alignment:
| Q |
6 |
ttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaaca---acaacaatgattaagatctagcttccttgaggatg |
102 |
Q |
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| T |
39406466 |
ttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaacctccaaaacaacaacaacaatgattaaaatctagcttccttgaggatg |
39406565 |
T |
|
| Q |
103 |
aagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagcaaaacttcatcactgagatcgaaaataaccacttcgtggtggttacatcc |
202 |
Q |
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||| |||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
39406566 |
aaggtcccaaaacaacaatgactatgaagatgtcacaatttcgaacgagcaaagcttcatcactgagatcgaaaataaccactttgtgatggttaaatcc |
39406665 |
T |
|
| Q |
203 |
tacgccctgatgctgttacagtaatatcaggttgctagtgtatgctgccgtcgccgccgagttgaaaagagatggtgtatagtataat |
290 |
Q |
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|||||||||||||| | ||| |||| ||||||||| ||||| || || ||||||||||||||||||||||| |||||||||||||| |
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| T |
39406666 |
tacgccctgatgctatcacaataatgtcaggttgccggtgtacgccgcagtcgccgccgagttgaaaagagaccgtgtatagtataat |
39406753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 50430704 - 50430994
Alignment:
| Q |
1 |
accacttttaagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaacaacaacaatgattaagatctagcttccttgagga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||| || || |||||||||| |||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
50430704 |
accacttttaagttttatcttcacttcctcattctctcctactttatgcaataaaacatccaaaacaacaacaacgattaagatttagcttctttgagga |
50430803 |
T |
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| Q |
101 |
tgaagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagc--aaaacttcatcactgagatcgaaaataaccacttcgtggtggttac |
198 |
Q |
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| T |
50430804 |
tcaagttcccaaaacaacaacgactatgaagatgtcgtaattttgaaggagcaaaaaacttcatcactgagatcgaaaataaccacttcgtgattgttaa |
50430903 |
T |
|
| Q |
199 |
atcctac-gccctgatgctgttacagtaatatcaggttgctagtgtatgctgccgtcgccgccgagttgaaaagagatggtgtatagtata |
288 |
Q |
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||||||| |||||||| ||| ||||||| ||| |||| | ||||| || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
50430904 |
atcctacacccctgatgttgtcacagtaacgtcaagttgtttgtgtacgccgccgtcgccgccgagttgaaaagagacggtgtatagtata |
50430994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 53 - 288
Target Start/End: Complemental strand, 21672584 - 21672349
Alignment:
| Q |
53 |
aaaagctccaaaacaacaacaatgattaagatctagcttccttgaggatgaagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagc |
152 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
21672584 |
aaaacctccaaaacaagaacaatgattaagatctagcttctttgaggttgaagatcccaaaacaacagcgactatgaagatatcgtaatttcgaatgagc |
21672485 |
T |
|
| Q |
153 |
aaaacttcatcactgagatcgaaaataaccacttcgtggtggttacatcctacgccctgatgctgttacagtaatatcaggttgctagtgtatgctgccg |
252 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||| ||| |||||| ||||| ||| ||| ||| |||||||||| |||||||| |||| |
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| T |
21672484 |
aaaacttcatcactgagatcgaaaataaccacttcatgatggttaaatcttacgccatgatgttgtcacaataacgtcaggttgctggtgtatgccgccg |
21672385 |
T |
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| Q |
253 |
tcgccgccgagttgaaaagagatggtgtatagtata |
288 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||| |
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| T |
21672384 |
tcaccgccgagttgaaaagagactgtgtatagtata |
21672349 |
T |
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