View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_17 (Length: 251)
Name: NF20583_low_17
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 37204204 - 37204122
Alignment:
| Q |
153 |
aaacaaaaacctctcttcaactttttctgcattcaacaacacaaccatgccaaggaggacagtaaggaatccgaaaaggaaga |
235 |
Q |
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| T |
37204204 |
aaacacaaacctctcttcaactttttctgcattcaacaacacaaccatgccaaggaggacagtaaggaatccgaaaaggaaga |
37204122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 37209953 - 37209920
Alignment:
| Q |
131 |
cattgtagcgtgtgagaaagagaaacaaaaacct |
164 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37209953 |
cattgtagcgtgtgagaaagagaaacaaaaacct |
37209920 |
T |
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