View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_18 (Length: 248)
Name: NF20583_low_18
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_18 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 906419 - 906204
Alignment:
| Q |
23 |
tgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
906419 |
tgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttaattctcttttgtatctccaagctttcatcaccttccatg |
906320 |
T |
|
| Q |
123 |
attctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906319 |
attctctttacacatttagcaacttcctctcttttcactatcccactttcatcatcaacctttggcctcacagccactttgagcacatctgtcaataatc |
906220 |
T |
|
| Q |
223 |
tcgcattcatcctttg |
238 |
Q |
| |
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|||||||||||||||| |
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| T |
906219 |
tcgcattcatcctttg |
906204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 894232 - 894439
Alignment:
| Q |
31 |
tagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctt |
130 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
894232 |
tagatgaaccattttcacttgttgcaacagcagcaccaacactcaattccttaattctcttttgtatttccaagctttcatcaccttccatgattctctt |
894331 |
T |
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| Q |
131 |
tacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattc |
230 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||| | |||||| |
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| T |
894332 |
tacacagttggcaacttcttctcttttcactatcccactttcatcatcaatctttggcctcacagccaccttgagctcatctgtcaataatttggcattc |
894431 |
T |
|
| Q |
231 |
atcctttg |
238 |
Q |
| |
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|||||||| |
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| T |
894432 |
atcctttg |
894439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 8294176 - 8294393
Alignment:
| Q |
23 |
tgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatg |
122 |
Q |
| |
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|||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||| ||||| || || ||||||||||| |||| |||| |
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| T |
8294176 |
tgctttcctagaagaaccatgctcacttagcacagtagcagcaccaacactcaattctttgattttctttctaatttcaaagctttcatctcctttcatg |
8294275 |
T |
|
| Q |
123 |
attctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatc |
222 |
Q |
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||||| |||| | ||| |||||||||||| ||| | |||||| ||||||| ||||||||||||||||| ||||||||||| ||||| || | |||| |
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| T |
8294276 |
attctttttatagctttggcaacttcctcttgttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaatt |
8294375 |
T |
|
| Q |
223 |
tcgcattcatcctttgct |
240 |
Q |
| |
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| |||||||||||||||| |
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| T |
8294376 |
ttgcattcatcctttgct |
8294393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 33257579 - 33257362
Alignment:
| Q |
23 |
tgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatg |
122 |
Q |
| |
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|||||||||||| |||||||| |||||| | | |||||||| | ||||||||||||||||| ||||| | || || ||||||||||| ||||||||| |
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| T |
33257579 |
tgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaaagctttcatctccttccatg |
33257480 |
T |
|
| Q |
123 |
attctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatc |
222 |
Q |
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|||||||||| | ||| | |||||||||| ||| | ||||||| ||||| | |||||||||||||| || |||||||| |||||||| || | |||| |
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| T |
33257479 |
attctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttttagcacatcagtgagtaatt |
33257380 |
T |
|
| Q |
223 |
tcgcattcatcctttgct |
240 |
Q |
| |
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| |||||||| ||||||| |
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| T |
33257379 |
ttgcattcattctttgct |
33257362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 1697 - 1480
Alignment:
| Q |
23 |
tgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatg |
122 |
Q |
| |
|
|||||||||||| |||||||| |||||| | | |||||||| | ||||||||||||||||| ||||| | || || ||||||||||| ||||||||| |
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| T |
1697 |
tgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaaagctttcatctccttccatg |
1598 |
T |
|
| Q |
123 |
attctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatc |
222 |
Q |
| |
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|||||||||| | ||| | |||||||||| ||| | ||||||| ||||| | |||||||||||||| || |||||||| |||||||| || | |||| |
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| T |
1597 |
attctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttttagcacatcagtgagtaatt |
1498 |
T |
|
| Q |
223 |
tcgcattcatcctttgct |
240 |
Q |
| |
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| |||||||| ||||||| |
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| T |
1497 |
ttgcattcattctttgct |
1480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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