View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_19 (Length: 247)
Name: NF20583_low_19
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 8828449 - 8828668
Alignment:
| Q |
18 |
gcatcaaatcgttctgaaatcatccaaaagattgcacatgcatgtcgaaattatggnnnnnnncaagtatattcatcatcaaatcaaaaacttgtttann |
117 |
Q |
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| T |
8828449 |
gcatcaaatcgttctgaaatcatccaaaagattgcacatgcatgtcgaaattatggtttttttcaagtatattcatcatcaaatcaaaaacttgtttatt |
8828548 |
T |
|
| Q |
118 |
nnnnnnagctctaaatagcctagcacgaaaatcatacgcatagttcttgaaagtggaaaattgagagtttgaaactcaacactaacatatgaaatgttta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
8828549 |
ttttttagctctaaatagcctagcacgaaaatcatacgcatagttcttgaaagtggaaaattgcgagtttgaaactcaac-ctaacatatgaaatgttta |
8828647 |
T |
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| Q |
218 |
caactttttattatttcatct |
238 |
Q |
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||||||||||||||||||||| |
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| T |
8828648 |
caactttttattatttcatct |
8828668 |
T |
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