View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_22 (Length: 227)
Name: NF20583_low_22
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 7890095 - 7889873
Alignment:
| Q |
6 |
accttatacattaggttaacatttttctttctttaaggagaagcaatgtcttgttaatggtaaaatgttgttgtatgggagatattgtgtgtgccgctaa |
105 |
Q |
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| T |
7890095 |
accttatacattaggttaacatttttctttctttaaggagaagcaatgtcttgttaatggtaaaatgttgttgtatgggagatattgtgtgtgccgctaa |
7889996 |
T |
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| Q |
106 |
cggaatcatttgcataatgctttggaaaattgatcttaatcttaattgttgctacataattaccaatgccatgtatttgtgtaaattttagtt-nnnnnn |
204 |
Q |
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| T |
7889995 |
cggaatcatttgcataatgctttggaaaattgatcttaatcttaattgttgctacataattaccaatgccatgtatttgtttaaattttagttaaaaaaa |
7889896 |
T |
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| Q |
205 |
ntattatttgtgtagataaatcc |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
7889895 |
atattatttgtgtagataaatcc |
7889873 |
T |
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