View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_4 (Length: 551)
Name: NF20583_low_4
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 9 - 532
Target Start/End: Complemental strand, 54787076 - 54786554
Alignment:
| Q |
9 |
agcacagacgacaacttaatttgattcatctttcttgttgaacaagctttttcgggcactattagagaggcattgtcaggtgggagtggttcaacgttaa |
108 |
Q |
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| T |
54787076 |
agcacagacgacaacttaatttgattcatctttcttgttgaacaagctttttcgggcactattggagaggcattgtcaggtgggagtggttcaacgttaa |
54786977 |
T |
|
| Q |
109 |
tatcaaccttcattccatggaagcaaaagcctctaccacatagaaagtaatatgtctttgcctctaatagttggaaaacatctcttcctcctctcgtgat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54786976 |
tatcaaccttcattccatggaagcaaaagcctctaccacatagaaagtaatatgtctttgcctctaagagttggaaaacatctcttcctcctctcgtgat |
54786877 |
T |
|
| Q |
209 |
gttgcttatgaagcccttatcaacacatttctcataatttgttttgttcacctcaagaacattatagatgtgcttatcaaaaccaaaatctatttacaaa |
308 |
Q |
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| T |
54786876 |
gttgcttatgaagcccttatcaacacatttctcataatttgttttgttcacctcaagaacattatagatgtgcttatcaaaaccaaaatctatttacaaa |
54786777 |
T |
|
| Q |
309 |
aaagagaattcacttcagttaataataaataaattatttgcaatgatattaatcaacatgtgtcaggaaggaacgaacttacatagccaatcaccctgat |
408 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54786776 |
aaagagaattcacttcagttaataataaataaa-tatttgcaatgatattaatcaacatgtgtcaggaaggaacgaacttacatagccaatcaccctggt |
54786678 |
T |
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| Q |
409 |
aaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacctccaaccctgtgcaacacaggttctctgccttctat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54786677 |
aaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacctccaaccctgtgcaacacaggttctctgccttctat |
54786578 |
T |
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| Q |
509 |
tctgtaagaccccattgtaatgat |
532 |
Q |
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| T |
54786577 |
tctgtaagaccccattgtaatgat |
54786554 |
T |
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