View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20583_low_5 (Length: 439)

Name: NF20583_low_5
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20583_low_5
NF20583_low_5
[»] chr1 (8 HSPs)
chr1 (135-434)||(30807832-30808131)
chr1 (214-434)||(30799891-30800111)
chr1 (206-417)||(30783110-30783321)
chr1 (293-424)||(30744615-30744746)
chr1 (330-427)||(30793168-30793265)
chr1 (312-424)||(30766085-30766197)
chr1 (329-404)||(30739638-30739713)
chr1 (312-432)||(30758633-30758753)
[»] chr7 (1 HSPs)
chr7 (235-434)||(22014321-22014520)
[»] chr5 (1 HSPs)
chr5 (235-434)||(15282627-15282826)
[»] chr3 (1 HSPs)
chr3 (235-434)||(18158239-18158438)
[»] chr2 (1 HSPs)
chr2 (235-434)||(24224125-24224324)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 135 - 434
Target Start/End: Original strand, 30807832 - 30808131
Alignment:
Q  135 gagttatttttatattattacatatctcttttacatcatcaaatacaatacatttttccttccaaaaaacttatttcatttaattctttggtgcctcaaa 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30807832 gagttatttttatattattacatatctcttttacatcatcaaatacaatacatttttccttccaaaaaacttatttcatttaattctttggtgcctcaaa 30807931  T
Q  235 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30807932 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgggaattgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 30808031  T
Q  335 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacaaccctatgct 434  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  30808032 gtgatagcttgtgctggctctacgtaacaatcatctgaaggagctacaaaaaatgcaccagttgtacgagcatgacttgaatttgtcacagccctatgct 30808131  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 214 - 434
Target Start/End: Original strand, 30799891 - 30800111
Alignment:
Q  214 ttaattctttggtgcctcaaatgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaa 313  Q
    ||||||||||| |||| |||||||| | ||||| || || |||||| ||||||||||||||||||||||| ||||||| ||||||||||| |  ||| |     
T  30799891 ttaattctttgttgccccaaatgatgtaagcactacatcggtgtcaccatatttgttaaagtagtgggaactgaaatccttgtatttgaaaggtttgcac 30799990  T
Q  314 attggtggattatgttcatcagtgatagcttgtgctggctctac-gtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgactt 412  Q
    ||||||||||| ||||||||| ||| || ||||||||||||||| ||| |||||||||||||||||||   |||| ||||||||||| ||| | ||||||    
T  30799991 attggtggattgtgttcatcaatgaaagattgtgctggctctacagtg-caatcatctgaaggagctaagcaaaaagcagcagttgtgcgaccttgactt 30800089  T
Q  413 gaatttgtcacaaccctatgct 434  Q
    | ||| ||||| || |||||||    
T  30800090 gcattggtcaccactctatgct 30800111  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 417
Target Start/End: Original strand, 30783110 - 30783321
Alignment:
Q  206 tatttcatttaattctttggtgcctcaaatgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaagg 305  Q
    |||||||||||||||||||||||||||||||||||||||| ||  | || |||| ||  | |||||||| | ||      ||| || |||||||| || |    
T  30783110 tatttcatttaattctttggtgcctcaaatgatttcagcagcaggtatgagtcaccaagtgtgttaaagaattgcttgaggaactccttgtatttaaaag 30783209  T
Q  306 acttgaaaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagc 405  Q
    |||| ||||| ||| | || |  |||||||||| | ||| ||||||||||| | ||||||||||| | |||||||  ||||| ||||||| ||| ||||     
T  30783210 actttaaaataggttggttgttctcatcagtgagatcttctgctggctctatgagacaatcatctaatggagctatgaaaaaggcagcagatgtgcgagt 30783309  T
Q  406 atgacttgaatt 417  Q
    ||||||||||||    
T  30783310 atgacttgaatt 30783321  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 424
Target Start/End: Original strand, 30744615 - 30744746
Alignment:
Q  293 ttgtatttgaaggacttgaaaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcag 392  Q
    ||||||||| | |||||  |||| |||||||| ||||||||| ||| | ||| || ||| || | |  ||||||| |||| ||||||| |||||| ||||    
T  30744615 ttgtatttgtaagacttataaataggtggattgtgttcatcaatgagatcttttgttggttcaatgaaacaatcacctgatggagctataaaaaaggcag 30744714  T
Q  393 cagttgtacgagcatgacttgaatttgtcaca 424  Q
    ||||||||||||| |||  |||||||||||||    
T  30744715 cagttgtacgagcttgatctgaatttgtcaca 30744746  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 427
Target Start/End: Original strand, 30793168 - 30793265
Alignment:
Q  330 catcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacaacc 427  Q
    ||||| |||||||||||||||||| |||   ||||||| ||||||||||||   ||||||||||| |||| ||| | | | |||||||||||||||||    
T  30793168 catcaatgatagcttgtgctggctatacagtacaatcagctgaaggagctaggcaaaatgcagcacttgttcgaccttcatttgaatttgtcacaacc 30793265  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 424
Target Start/End: Original strand, 30766085 - 30766197
Alignment:
Q  312 aaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgact 411  Q
    |||| |||||||| ||||||||| ||| | ||| || ||| || | |  ||||||| |||| ||||||| |||||| ||||||||||||||||| |||      
T  30766085 aaataggtggattgtgttcatcaatgagatcttttgttggttcaatgaaacaatcacctgatggagctataaaaaaggcagcagttgtacgagcttgatc 30766184  T
Q  412 tgaatttgtcaca 424  Q
    |||||||||||||    
T  30766185 tgaatttgtcaca 30766197  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 404
Target Start/End: Original strand, 30739638 - 30739713
Alignment:
Q  329 tcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgag 404  Q
    ||||||| || | ||||||||||||||| | ||||||||||||| |||||||  ||||| |||||| |||||||||    
T  30739638 tcatcagggagatcttgtgctggctctatgagacaatcatctgatggagctatgaaaaaggcagcacttgtacgag 30739713  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 432
Target Start/End: Original strand, 30758633 - 30758753
Alignment:
Q  312 aaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgact 411  Q
    |||| |||||||| ||||||||| ||| | ||| || ||| || | |  ||||||| |||| ||||||| |||||| ||||||||||| ||||| ||       
T  30758633 aaataggtggattgtgttcatcaatgagatcttttgttggttcaatgaaacaatcacctgatggagctataaaaaaggcagcagttgtgcgagcttgttc 30758732  T
Q  412 tgaatttgtcacaaccctatg 432  Q
    ||||||||||||||| |||||    
T  30758733 tgaatttgtcacaactctatg 30758753  T

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Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 235 - 434
Target Start/End: Complemental strand, 22014520 - 22014321
Alignment:
Q  235 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22014520 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 22014421  T
Q  335 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacaaccctatgct 434  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22014420 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacagccctatgct 22014321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 235 - 434
Target Start/End: Complemental strand, 15282826 - 15282627
Alignment:
Q  235 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15282826 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 15282727  T
Q  335 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacaaccctatgct 434  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15282726 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatggcttgaatttgtcacagccctatgct 15282627  T

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Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 235 - 434
Target Start/End: Complemental strand, 18158438 - 18158239
Alignment:
Q  235 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18158438 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 18158339  T
Q  335 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacaaccctatgct 434  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  18158338 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatggcttgaatttgtcacagccctatgct 18158239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 235 - 434
Target Start/End: Complemental strand, 24224324 - 24224125
Alignment:
Q  235 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 334  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24224324 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 24224225  T
Q  335 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacaaccctatgct 434  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  24224224 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatggcttgaatttgtcacagccctatgct 24224125  T

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