View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_7 (Length: 431)
Name: NF20583_low_7
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 2151722 - 2152109
Alignment:
| Q |
1 |
cttccatttgagagtgtaatcaaaggttggttattcttgcaaacaacttcaaatcctgggtacacatatcgatcactttgagcattgttaatttgatttt |
100 |
Q |
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| T |
2151722 |
cttccatttgagagtgtaatcaaaggttgcttattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgatttt |
2151821 |
T |
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| Q |
101 |
cttctcttagttggaaagggaactcnnnnnnnngttccgacgagtttccacaatgtctcttgtcacaaattggagctgtgctttttgttgagtgaaaaag |
200 |
Q |
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| T |
2151822 |
cttttcttaattggaatgggaactcaaaaaaaagatccgacgagtttccacaatgtctcttgtcacacattggagctgtgctttttgttgagtgaaaaag |
2151921 |
T |
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| Q |
201 |
caagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt---------ggtgtgaatcactaaattgaaatattgattgtc |
291 |
Q |
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| T |
2151922 |
caagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagtggtgcttgaggtgtgaatcactaaattgaaatattgattgtc |
2152021 |
T |
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| Q |
292 |
aactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggatt |
379 |
Q |
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| T |
2152022 |
aactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggatt |
2152109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 2146313 - 2146433
Alignment:
| Q |
2 |
ttccatttgagagtgtaatcaaaggttggttattcttgcaaacaacttcaaatcctgggtacacatatcgatcactttgagcattgttaatttgattttc |
101 |
Q |
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| T |
2146313 |
ttccatttgagagtgtaatcaaaggttgcttatttttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttc |
2146412 |
T |
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| Q |
102 |
ttctcttagttggaaagggaa |
122 |
Q |
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| T |
2146413 |
ttctcttaattggaaagggaa |
2146433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 2142184 - 2142267
Alignment:
| Q |
1 |
cttccatttgagagtgtaatcaaaggttggt---tattcttgcaaacaacttcaaatcctgggtacacatatcgatcactttga |
81 |
Q |
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| T |
2142184 |
cttccatttgagagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtacccacatcgatcactttga |
2142267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
165 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
254 |
Q |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
172 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
258 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||||| |||| ||| ||||| |||||||||||||||| |||||||| |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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