View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_8 (Length: 420)
Name: NF20583_low_8
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 66 - 309
Target Start/End: Original strand, 55070353 - 55070590
Alignment:
| Q |
66 |
caatcaaactagaggcagcctttgtttctcagtttgtccttcttaacaacgcaatatgcagtccctttcaaagttactagttcctatgcaagttgttttg |
165 |
Q |
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| T |
55070353 |
caatcaaactagaggcagcctttgtttctcagtttgtccttcttaacaacgcaatatgcagtccctttcaaagttactagttcctatgcaagttgttttg |
55070452 |
T |
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| Q |
166 |
ttcatatagattcaacttcaagggtgcatttaatttgcaccatcagctatatgggtccaagttggaccannnnnnnctttcatggagaggatctcattat |
265 |
Q |
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| T |
55070453 |
ttcatataga------ttcaagggtgcatttaatttgcaccatcagctatatgggtccaagttggaccatttttttctttcatggagaggatctcattat |
55070546 |
T |
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| Q |
266 |
ctaaagcatgaaatgaagcgatgattaaatcgattcttcatacc |
309 |
Q |
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| T |
55070547 |
ctaaagcatgaaatgaagcgatgattaaatcgattcttcatacc |
55070590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 55070636 - 55070713
Alignment:
| Q |
327 |
cgtgagtatttaccacttctattatattaattataagtgacagaatcatgtcagatttttggcttcaggggaaccaag |
404 |
Q |
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| T |
55070636 |
cgtgagtatttaccacttctattatattaattataagtgacagaatcatgtcagatttgtggcttcaggggaaccaag |
55070713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 55069152 - 55069201
Alignment:
| Q |
17 |
tgtcactctaaatatactaactttaatttttagtcccactaaaaaattcc |
66 |
Q |
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| T |
55069152 |
tgtcactctaaatatactaacattaatttttagtcccactaaaaaattcc |
55069201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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