View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20583_low_9 (Length: 415)
Name: NF20583_low_9
Description: NF20583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20583_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 34262580 - 34262285
Alignment:
| Q |
17 |
cagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaagaaatagctctatgtgataccatgaatcaagaaaaaacataaaatgt |
116 |
Q |
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| T |
34262580 |
cagagaccgaagggattgttctttgtgatacaatggatcggcaagagaagaaagaaatagctctatgtgataccatgaatcaagaaaaaacataaaatgt |
34262481 |
T |
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| Q |
117 |
tttcttgtaagaggcgttcattttcattcaaaccaattagttctaaggttgtagnnnnnnnnnnncttggttaaatttagtagtgttcaatcaatgtact |
216 |
Q |
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| T |
34262480 |
tttcttgtaagaggcgttcattttcattcaaaccaattagttctaaggttgtagtttttttttttcttggttaaatttagtagtgttcaatcaatgtact |
34262381 |
T |
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| Q |
217 |
tttttcttgtcaagtatggttaataatgatacattttaagttc--tatattgtgcattccattaatggatctgtacaatactaccataagccaata |
310 |
Q |
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| T |
34262380 |
tttttcttgtcaagtatggttaataatgatacattttaagttctatatattgtgcattccattaatggatctgtacaatactaccataagccaata |
34262285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 35621492 - 35621419
Alignment:
| Q |
26 |
aagggattgttctttgtgatacaatggatcagcaggagaagaaagaaatagctctatgtgataccatgaatcaa |
99 |
Q |
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| T |
35621492 |
aagggattgttctttgtgatacaatggatcaacaagagaagaaagaattagctatatatgatgccatgaatcaa |
35621419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 35 - 277
Target Start/End: Complemental strand, 37576503 - 37576264
Alignment:
| Q |
35 |
ttctttgtgatacaatggatcagcaggagaagaaagaaatagctctatgtgataccatgaatcaagaaaaaacataaaatgttttcttgtaagaggc-gt |
133 |
Q |
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| T |
37576503 |
ttctttgtggtacaatggatcagcaagagaagaaagaaatagctctatgtgataccatgaatcaagaaaaaacataaaatgttttcttgtaagaggcagt |
37576404 |
T |
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| Q |
134 |
tcattttcattcaaaccaattagttctaaggttgtagnnnnnnnnnnncttggttaaatttagtagtgttcaatcaatgtacttttttcttgtcaagtat |
233 |
Q |
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| T |
37576403 |
tcattttcattcaaaccaattagttc-aaggttgtagttattttttttcttggttaaatt---tagtgttcaatcaatgtacttttttcttgtcaagtat |
37576308 |
T |
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| Q |
234 |
ggttaataatgatacattttaagttctatattgtgcattccatt |
277 |
Q |
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| T |
37576307 |
ggttaataatgatacattttatgttctatgttgtgcattccatt |
37576264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 37578558 - 37578621
Alignment:
| Q |
314 |
gttcaaacagaacaaatattgttacaactacagtatatccttacaaaatgtaaacagaaaatag |
377 |
Q |
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| T |
37578558 |
gttcaagcataacaaataatgttacaactacagtatttccttacaaaacgtaaacaaaaaatag |
37578621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 37602399 - 37602341
Alignment:
| Q |
17 |
cagagaccgaagggattgttctttgtgatacaatggatcagcaggagaagaaagaaata |
75 |
Q |
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| T |
37602399 |
cagagactaaagggattgttctttgtgatacaatggatcaacaagagaggagagaaata |
37602341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 37602245 - 37602181
Alignment:
| Q |
186 |
gttaaatttagtagtgttcaatcaatgtacttttttcttgtcaagtatggttaataatgatacatttta |
254 |
Q |
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| T |
37602245 |
gttaaatttagtagtgttcaa--aatatacttttt-cttgt-aagtagggttaataatgatacatttta |
37602181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 14544225 - 14544293
Alignment:
| Q |
27 |
agggattgttctttgtgatacaatggatcagcaggagaagaaagaaatagctctatgtgataccatgaa |
95 |
Q |
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| T |
14544225 |
agggattgttctttgtgatacaatggatcaacaagagaagaaagaaatagctttgtgtgatgccatgaa |
14544293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 14579358 - 14579288
Alignment:
| Q |
31 |
attgttctttgtgatacaatggatcagcaggagaagaaagaaatagctctatgtgataccatgaatcaaga |
101 |
Q |
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| T |
14579358 |
attgttctttgtgatacaatggatcaacaagagaagaaagaaatagctatgtctgatgccatgaatcaaga |
14579288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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