View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20584_high_2 (Length: 435)
Name: NF20584_high_2
Description: NF20584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20584_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 37767705 - 37767435
Alignment:
| Q |
11 |
gatgaatatgcaaatttatgatgtttttctttctgttttgctagcctttgtattcataatttgatttaatatagnnnnnnnnnnnn----------gtgt |
100 |
Q |
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| T |
37767705 |
gatgaatatgcaaatttatgatgtttttctttttgttttgctagcctttgtattcataatttgatttaatatagttttttttttttttttgtgtgtgtgt |
37767606 |
T |
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| Q |
101 |
atagtatactaggaggagtgttgattgtttgtggcctatacgcggtgctatggggtaaaggtagagaaacacataagaagattgaattacagccctcaga |
200 |
Q |
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| T |
37767605 |
atagtatactaggaggagtgttgattgtttgtggcctatacgcggtgctatggggtaaaggtagagaaacacataagaagattgaattagagccctcaga |
37767506 |
T |
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| Q |
201 |
aatcattggtgattccgaagctgcaaggccattgttgagtccatgagtatcgatgctcatttaaaattgtaaaa |
274 |
Q |
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| T |
37767505 |
aatcattggtgattccgaagctgcaaggccattgttgagtccatgag--tcg-tgctcatttaaaatagtaaaa |
37767435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 243 - 417
Target Start/End: Complemental strand, 37767434 - 37767252
Alignment:
| Q |
243 |
atgagtatcgatgctcatttaaaattgtaaaattttcaccc-aagagtcgagaaatttagattgtgtatgtatgaatgaatgtat--------gatacaa |
333 |
Q |
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| T |
37767434 |
atgagtatcgatgctcatttaaaattgtaaa-ttttcactctaagaatcgagaaatttagattgtgtatgtatgaatgaatgtataaatgtatgatacaa |
37767336 |
T |
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| Q |
334 |
tgtccatttgaagtactgatttctccagctattatgtacgcatgactctcactcttactacacatggttattgtgatgtacaac |
417 |
Q |
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| T |
37767335 |
tgtccatttgaagtactgatttctccagctattatgtacgcatgactctcactcttactacacatggttattgtgatgtacaac |
37767252 |
T |
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