View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20584_low_1 (Length: 452)
Name: NF20584_low_1
Description: NF20584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20584_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 50 - 432
Target Start/End: Complemental strand, 30315803 - 30315421
Alignment:
| Q |
50 |
ccttcttctctttccctttgctgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatg |
149 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315803 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30315704 |
T |
|
| Q |
150 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaattaagtagaaccaaatattttaaataatgttaacatgtcattn |
249 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315703 |
ctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaattaagtagaaccaaatattttaaataatgttaacatgtcatta |
30315604 |
T |
|
| Q |
250 |
nnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggtagaaaactgttgtaattaggccatacagaaggaaagagactgagtgaga |
349 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
30315603 |
aaaataaaaaataactaatataggctacattcaatttaatttaattttggtagaaaactattgtaattaggccatacagaaggaaagagaccgagtgaga |
30315504 |
T |
|
| Q |
350 |
atatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatctgaagaagc |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
30315503 |
atatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagc |
30315421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 30292322 - 30292147
Alignment:
| Q |
34 |
cctttttctatggcttc---cttcttctctttccctttgctgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatct |
130 |
Q |
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||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
30292322 |
cctttttctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatct |
30292223 |
T |
|
| Q |
131 |
tgagctgatccagggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30292222 |
tgagctgatccagggaatgctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaa |
30292147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 30304937 - 30304781
Alignment:
| Q |
50 |
ccttcttctctttccctttgctgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatg |
149 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304937 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30304838 |
T |
|
| Q |
150 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30304837 |
ctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaa |
30304781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 30300145 - 30299989
Alignment:
| Q |
50 |
ccttcttctctttccctttgctgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatg |
149 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30300145 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30300046 |
T |
|
| Q |
150 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
206 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30300045 |
ctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaa |
30299989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 30287269 - 30287113
Alignment:
| Q |
50 |
ccttcttctctttccctttgctgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatg |
149 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287269 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30287170 |
T |
|
| Q |
150 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
206 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
30287169 |
ctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaa |
30287113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 202 - 438
Target Start/End: Complemental strand, 30287064 - 30286834
Alignment:
| Q |
202 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
301 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
30287064 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30286965 |
T |
|
| Q |
302 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
401 |
Q |
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| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| |
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| T |
30286964 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagttcctttgattgttctccgcattgatac |
30286871 |
T |
|
| Q |
402 |
caaatccaagcaaagagagatctgaagaagcagttac |
438 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
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| T |
30286870 |
caaatccaagcaaagagagatccgaagaagcagttac |
30286834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 202 - 432
Target Start/End: Complemental strand, 30292098 - 30291874
Alignment:
| Q |
202 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
301 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
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|
| T |
30292098 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30291999 |
T |
|
| Q |
302 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
401 |
Q |
| |
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| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
30291998 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30291905 |
T |
|
| Q |
402 |
caaatccaagcaaagagagatctgaagaagc |
432 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |
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|
| T |
30291904 |
caaatccaagcaaagagagatccgacgaagc |
30291874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 202 - 432
Target Start/End: Complemental strand, 30304732 - 30304508
Alignment:
| Q |
202 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
301 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
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|
| T |
30304732 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30304633 |
T |
|
| Q |
302 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
401 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
30304632 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30304539 |
T |
|
| Q |
402 |
caaatccaagcaaagagagatctgaagaagc |
432 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |
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|
| T |
30304538 |
caaatccaagcaaagagagatccgacgaagc |
30304508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 30299370 - 30299298
Alignment:
| Q |
360 |
taccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatctgaagaagc |
432 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
30299370 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagc |
30299298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 46810582 - 46810441
Alignment:
| Q |
62 |
tccctttgctgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatgctagctctttca |
161 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |||||| ||||||| ||| || ||||| |||| ||| |||||||||||||| | |||||| | |
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|
| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
46810483 |
T |
|
| Q |
162 |
ctggtctctgaatttggcttatcacattgtcttcctcacctt |
203 |
Q |
| |
|
|||| || | ||||| |||||||||||||| |||||||||| |
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|
| T |
46810482 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
46810441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 46810333 - 46810280
Alignment:
| Q |
358 |
tataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaag |
411 |
Q |
| |
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|||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
46810333 |
tatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaag |
46810280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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