View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20584_low_3 (Length: 250)
Name: NF20584_low_3
Description: NF20584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20584_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 33047595 - 33047829
Alignment:
| Q |
16 |
atgcaacagcgtgaaataggaggttttgaaaagaacattggtgaatattttgattactctcccctgctctaatagtagctagattttgagttcccacatc |
115 |
Q |
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| T |
33047595 |
atgcaacagcgtgaaataggaggttttgaaaagaacattggtgaatattttgattactctcccctgctctaatagtagctagattttgagttcccacatc |
33047694 |
T |
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| Q |
116 |
aatatttctaacatttgttatttatatccaattgaacattcttggggcaatcaatattgggagtaatgaatttatacaagtacatgaacaatattcaact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33047695 |
aatatttctaacatttgttatttatatccaattgaacattcttggggcaatcaatattgggagtaatgaatttatacaagtatatgaacaatattcaact |
33047794 |
T |
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| Q |
216 |
gtttgatttatgtgatactgccccagtggcagaaa |
250 |
Q |
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| T |
33047795 |
gtttgatttatgtgatactgccccagtggcagaaa |
33047829 |
T |
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