View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20584_low_4 (Length: 250)
Name: NF20584_low_4
Description: NF20584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20584_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29117161 - 29116926
Alignment:
| Q |
1 |
ataaactatttaaaccaatatttcagataaatagccattcaaaactgaaaagtcagcactgattgtaaaaaatagaatcatgctttctaaaaatcattca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29117161 |
ataaactatttaaaccaatatttcagataaatagccattcaaaactgcaaagtcagcactgattgtaaaaaatagaatcatgctttctaaaaatcattca |
29117062 |
T |
|
| Q |
101 |
agctccaaactctaaacctagttccaaatgaccaaaaaatttgaagaccattctagtttttaattcttgtctttgatgcatatctgagtagactatgcag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29117061 |
agctccaaactctaaacctagttccaaatgaccaaacaatttgaagaccattctagtttttaattcttgtctttgatgcatatctgagtacactatgcag |
29116962 |
T |
|
| Q |
201 |
ctgcaatgagaccttagttactcattacacattagt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29116961 |
ctgcaatgagaccttagttactcattacacattagt |
29116926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29062307 - 29062072
Alignment:
| Q |
1 |
ataaactatttaaaccaatatttcagataaatagccattcaaaactgaaaagtcagcactgattgtaaaaaatagaatcatgctttctaaaaatcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062307 |
ataaactatttaaaccaatatttcagataaatagccattcaaaaatgcaaagtcagcactgattgtaaaaaatagaatcatgctttctaaaaatcattca |
29062208 |
T |
|
| Q |
101 |
agctccaaactctaaacctagttccaaatgaccaaaaaatttgaagaccattctagtttttaattcttgtctttgatgcatatctgagtagactatgcag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29062207 |
agctccaaactctaaacctagttccaaatgaccaaacaatttgaagaccattctagtttttaattcttgtctttgatgcatatctgagtacactatgcag |
29062108 |
T |
|
| Q |
201 |
ctgcaatgagaccttagttactcattacacattagt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
29062107 |
ctgcaatgagaccttagttactcattacacattagt |
29062072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29100243 - 29100008
Alignment:
| Q |
1 |
ataaactatttaaaccaatatttcagataaatagccattcaaaactgaaaagtcagcactgattgtaaaaaatagaatcatgctttctaaaaatcattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29100243 |
ataaactatttaaaccaatatttcagataaatagccattcaaaagtgcaaagtcagcactgattgtaaaaaatagaatcatgctttctaaaaatcattca |
29100144 |
T |
|
| Q |
101 |
agctccaaactctaaacctagttccaaatgaccaaaaaatttgaagaccattctagtttttaattcttgtctttgatgcatatctgagtagactatgcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29100143 |
agctccaaactctaaacctagttccaaatgaccaaacaatttgaagaccattctagtttttaattcttgtctttgatgcatatctgagtacactatgcag |
29100044 |
T |
|
| Q |
201 |
ctgcaatgagaccttagttactcattacacattagt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
29100043 |
ctgcaatgagaccttagttactcattacacattagt |
29100008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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