View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20584_low_5 (Length: 237)
Name: NF20584_low_5
Description: NF20584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20584_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33048085 - 33048305
Alignment:
| Q |
1 |
cactggcatatatatcattcaagagtcaaacaatgaagtgaataccttgcccaaaaggagctctccggaaggaagagataccaccaaaggtggtgctagc |
100 |
Q |
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| T |
33048085 |
cactggcatatatatcattcaagagtcaaacaatgaagtgaataccttgcccaaaaggagctctccggaaggaagagataccaccaaaggtggtgctagc |
33048184 |
T |
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| Q |
101 |
ctcccagaagtaaaaacttcagatattgaaccactcgtagcattcagaatcacatacgcttttctaatccccaaacatatattctcacaacaccaactca |
200 |
Q |
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| T |
33048185 |
ctcccagaagtaaaaacttcagatattgaaccactcgtagcattcagaatcacgtacgcttttctaatccccaaacatatattctcaccacaccaactca |
33048284 |
T |
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| Q |
201 |
ttgacttcaccacatcaagaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33048285 |
ttgacttcaccacatcaagaa |
33048305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 7675146 - 7674975
Alignment:
| Q |
41 |
aataccttgcccaaaaggagctctccggaaggaagagataccaccaaaggtggtgctagcctcccagaagtaaaaacttcagatattgaaccactcgtag |
140 |
Q |
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|||||||| || | ||| |||||||| || |||| || || || ||||| || ||||| ||||||||||||||||| ||||| | | |||| | | || |
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| T |
7675146 |
aatacctttccaagaagcagctctcccgacggaataggcactactaaaggcggcgctagtctcccagaagtaaaaacctcagacaaagcaccatttgaag |
7675047 |
T |
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| Q |
141 |
cattcagaatcacatacgcttttctaatccccaaacatatattctcacaacaccaactcattgacttcacca |
212 |
Q |
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|||||| ||||||||| | ||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
7675046 |
cattcaaaatcacatattcccttctaatccccaaacatatattctccccacaccaactcatggacttcacca |
7674975 |
T |
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