View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20584_low_6 (Length: 237)
Name: NF20584_low_6
Description: NF20584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20584_low_6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 29100497 - 29100278
Alignment:
| Q |
18 |
aaactagggggaacaaagctttaattttgattcacttcactaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatact |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29100497 |
aaactagggggaacaaagctgtaattttgattcacttcacttactaatcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatact |
29100398 |
T |
|
| Q |
118 |
agttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29100397 |
agttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttggg |
29100298 |
T |
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| Q |
218 |
aaatcaatatatcctaaaat |
237 |
Q |
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|||||||||||||||||||| |
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| T |
29100297 |
aaatcaatatatcctaaaat |
29100278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 29062561 - 29062343
Alignment:
| Q |
18 |
aaactagggggaacaaagctttaattttgattcacttcactaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatact |
117 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062561 |
aaactagggggaacaaagctgtaattttgattcacttcacttactaatcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatact |
29062462 |
T |
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| Q |
118 |
agttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062461 |
agttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttggg |
29062362 |
T |
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| Q |
218 |
aaatcaatatatcctaaaa |
236 |
Q |
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||||||||||||||||||| |
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| T |
29062361 |
aaatcaatatatcctaaaa |
29062343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 29117415 - 29117197
Alignment:
| Q |
18 |
aaactagggggaacaaagctttaattttgattcacttcactaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatact |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29117415 |
aaactagggggaacaaagctgtaattttgattcacttcacttactaatcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatact |
29117316 |
T |
|
| Q |
118 |
agttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttggg |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29117315 |
agttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacctccttgctaatagcattcaattacctagattttggg |
29117216 |
T |
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| Q |
218 |
aaatcaatatatcctaaaa |
236 |
Q |
| |
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||||||||||||||||||| |
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| T |
29117215 |
aaatcaatatatcctaaaa |
29117197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 14065927 - 14065859
Alignment:
| Q |
114 |
tactagttttagaaccttattaagtcttaaaccaaacaaaagcaaaaaagatagcatactagcctacct |
182 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
14065927 |
tactagttttagaaccttattaattcttgaaccaaactaaagcaaaaaagatagcatgctagcctacct |
14065859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 24207430 - 24207533
Alignment:
| Q |
32 |
aaagctttaattttgattcacttcactaactattcaatcttgcatcacttaatcacaattttagagtgatttttatcaagtatactagttttagaacctt |
131 |
Q |
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||||| ||||||||||||||||||||| ||||||||||| |||||| || | ||||||| | | |||||||||||| |||| ||||| |||||||||| |
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| T |
24207430 |
aaagcattaattttgattcacttcacttgctattcaatctctcatcacctagttacaatttaatattgatttttatcatgtatgctagtattagaacctt |
24207529 |
T |
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| Q |
132 |
atta |
135 |
Q |
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|||| |
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| T |
24207530 |
atta |
24207533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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