View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_high_13 (Length: 263)
Name: NF20585_high_13
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 48495 - 48241
Alignment:
| Q |
1 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
100 |
Q |
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| T |
48495 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
48396 |
T |
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| Q |
101 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaaaaagaataacacacactcaaattaattaatccacatgacattgt |
200 |
Q |
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| T |
48395 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaaaaagaataacacacactcaaattaattaatccacatgacattgt |
48296 |
T |
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| Q |
201 |
ttgcagtggtagtagaagttatcatgttccggtgtctgtgtgttgtgtctgtgct |
255 |
Q |
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| T |
48295 |
ttgcagtggtagtagaagttatcatgttccggtgtctgtgtgttgtgtctgtgct |
48241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25851233 - 25851017
Alignment:
| Q |
1 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
100 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
25851233 |
caacttcacgagtcttcaaattcatgatttgtttgtccaaactagttgccttccagtaaccagagtttgtaactctcttagatcggttcccatttgaata |
25851134 |
T |
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| Q |
101 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaaaaagaataacacacactcaaattaattaatccacatgacattgt |
200 |
Q |
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| T |
25851133 |
cttggcttctttagtactgaaaaagtacctctcttgttccatatcacct------aatagaacaacacacactga----aattaatccacacgacattgc |
25851044 |
T |
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| Q |
201 |
ttgcagtggtagtagaagttatcatgt |
227 |
Q |
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||| ||| ||||||| ||||||||||| |
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| T |
25851043 |
ttgtagtagtagtagtagttatcatgt |
25851017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 25852127 - 25852282
Alignment:
| Q |
1 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
100 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||| ||||||||||||||| |||||||||||| || |
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| T |
25852127 |
caacttcacgagtcttcgaattcatgatttgtttgtccaaaccagtttccttccaataaccagattttctagctctgttagatcagttcccatttggata |
25852226 |
T |
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| Q |
101 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaa |
156 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25852227 |
cttggcttctttagtactgaaaaagtacctctcttgttccatatcacctaatagaa |
25852282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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