View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20585_high_14 (Length: 256)

Name: NF20585_high_14
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20585_high_14
NF20585_high_14
[»] chr3 (3 HSPs)
chr3 (13-256)||(52698751-52698994)
chr3 (13-233)||(52721414-52721634)
chr3 (13-233)||(52712593-52712813)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 52698994 - 52698751
Alignment:
Q  13 aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52698994 aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga 52698895  T
Q  113 aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52698894 aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg 52698795  T
Q  213 caaaaccccaactccaccctacttggttttgtaaataaaccaat 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  52698794 caaaaccccaactccaccctacttggttttgtaaataaaccaat 52698751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 52721634 - 52721414
Alignment:
Q  13 aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga 112  Q
    ||||||||||| |||||| |||||||||||||||| || |||||||||||| || ||||||  |||||||||||| |  || ||||||||||||||||||    
T  52721634 aatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaaga 52721535  T
Q  113 aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg 212  Q
    |||||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || |  | ||||||||||| || | ||||||||||||||| |     
T  52721534 aacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattc 52721435  T
Q  213 caaaaccccaactccacccta 233  Q
    |||||||||||| ||||||||    
T  52721434 caaaaccccaaccccacccta 52721414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 52712813 - 52712593
Alignment:
Q  13 aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga 112  Q
    ||||||||||| |||||| |||||||| ||||||| ||  ||||||||||| |||||||||| | |||||||||| |  || ||||||||||||||||||    
T  52712813 aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga 52712714  T
Q  113 aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg 212  Q
    |||||||| || |||||||||||||| ||||| ||||| |||||| ||| |||  | || |  | ||||||||||| || ||||||||||||||| | |     
T  52712713 aacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattc 52712614  T
Q  213 caaaaccccaactccacccta 233  Q
    |||||||||||| ||||||||    
T  52712613 caaaaccccaaccccacccta 52712593  T

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