View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20585_high_15 (Length: 251)
Name: NF20585_high_15
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 48747 - 48651
Alignment:
| Q |
20 |
tttagcaccacttctcctcttgagaaatatgcgacacagaacccaattttcattctgcaaaaccaaattcattcatattaatattaattacaaattc |
116 |
Q |
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| T |
48747 |
tttagcaccacttctcctcttgagaaatatgcgacacagaacccaattttcattctgcaaaaccaaattcattcatattaatattaattacaaattc |
48651 |
T |
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Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 48598 - 48508
Alignment:
| Q |
161 |
ttggagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttt |
251 |
Q |
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| T |
48598 |
ttggagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttt |
48508 |
T |
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Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 25852024 - 25852114
Alignment:
| Q |
161 |
ttggagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttt |
251 |
Q |
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| T |
25852024 |
ttggagtgagaggaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggtggtttgcctctgtagaaaacaagagttt |
25852114 |
T |
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Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 25851336 - 25851246
Alignment:
| Q |
161 |
ttggagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttt |
251 |
Q |
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| T |
25851336 |
ttggagtgagaggaattgaggcgatattcttgcatgatccaatcagttcttgaaccatgaggtggtttacctctgtagaaaacaagagttt |
25851246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25851474 - 25851401
Alignment:
| Q |
32 |
tctcctcttgagaaatatgcgacacagaacccaattttcattctgcaaaaccaaattcattcatattaatatta |
105 |
Q |
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| T |
25851474 |
tctcctcttcagaaatatgcgacatagaacccaattttcattcagcaaaacccaattcattcatattaatatta |
25851401 |
T |
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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 25851882 - 25851959
Alignment:
| Q |
28 |
cacttctcctcttgagaaatatgcgacacagaacccaattttcattctgcaaaaccaaattcattcatattaatatta |
105 |
Q |
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| T |
25851882 |
cacttctccccttcaaaaatatgcgacacataacccaattttcattctgcaaaacccaattcatttatattaatatta |
25851959 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 40363758 - 40363791
Alignment:
| Q |
177 |
tgaggcgatattcatgcatgatccaatcagttct |
210 |
Q |
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| T |
40363758 |
tgaggcgatattcatgcaagatccaatcagttct |
40363791 |
T |
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