View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20585_high_17 (Length: 250)
Name: NF20585_high_17
Description: NF20585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20585_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 35760175 - 35760380
Alignment:
| Q |
32 |
ttcttatatgatataatatcacatatataata--cctagataacaaaacttatatcctcagctacttttacaaaactggccctttagcagattcatatga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||| ||||||||| ||||||||||| |||||| || |
|
|
| T |
35760175 |
ttcttatatgatataatatcacatatataatatacctagata-caaaatttatatcctcggctactttcacaaaactgaccctttagcagcttcatagga |
35760273 |
T |
|
| Q |
130 |
gtcctttcttgcagtccaaggaatctgatcttcaattataccatggactatgagtagccaccttgtctgcataagcaaaatttcccctccttcctacacc |
229 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| | ||||||| || | ||||||| ||||| || |||||| ||||||||||||||||||| | || |
|
|
| T |
35760274 |
gtccttgcatgcagtccaaggcccttgatcttca--tttaccatgcaccaggagtagctaccttttccacataagaaaaatttcccctccttcctcctcc |
35760371 |
T |
|
| Q |
230 |
tcttcctcc |
238 |
Q |
| |
|
||||||||| |
|
|
| T |
35760372 |
tcttcctcc |
35760380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 35785189 - 35785389
Alignment:
| Q |
38 |
tatgatataatatcacatatataatac---ctagataacaaaacttatatcctcagctacttttacaaaactggccctttagcagattcatatgagtcct |
134 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
35785189 |
tatgatataatatcacatatataataataactagataataatacttatatcctcagccactttgacaaaactgaccctttagcagattcatatgagtctt |
35785288 |
T |
|
| Q |
135 |
ttcttgcagtccaaggaatctgatcttcaattataccatggactatgagtagccaccttgtctgcataagcaaaatttcccctccttcctacacctcttc |
234 |
Q |
| |
|
| |||||||| ||||| || ||||||||| | ||||||| | || ||||||| ||||||| |||| ||||||||||||| ||||| | ||||||| |
|
|
| T |
35785289 |
tgcttgcagtacaaggtatttgatcttca--tttaccatgcagtaggagtagctaccttgtgcacatagttaaaatttcccctcattcctcctcctcttc |
35785386 |
T |
|
| Q |
235 |
ctc |
237 |
Q |
| |
|
||| |
|
|
| T |
35785387 |
ctc |
35785389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 35765771 - 35765883
Alignment:
| Q |
123 |
catatgagtcctttcttgcagtccaaggaatctgatcttcaattataccatggactatgagtagccaccttgtctgcataagcaaaatttcccctccttc |
222 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||||| ||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35765771 |
cataggagtcctttcttgcagtccaaagcatctgatcttcattta--ccatgcactaggagtagttaccttgtctgcataagcaaaatttcccctccttc |
35765868 |
T |
|
| Q |
223 |
ctacacctcttcctc |
237 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
35765869 |
ctccacctcttcctc |
35765883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 35798635 - 35798739
Alignment:
| Q |
42 |
atataatatcacatatataatacctagataacaaaacttatatcctcagctacttttacaaaactggccctttagcagattcatatgagtcctttcttgc |
141 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||||||||| | ||||| ||||||||| |||| |||||| |||||| | |||||| ||||| |
|
|
| T |
35798635 |
atataacatcacatatataatacctagaaaacataacttatatcct-gccaactttcacaaaactgaccctctagcagcttcataggcgtccttgcttgc |
35798733 |
T |
|
| Q |
142 |
agtcca |
147 |
Q |
| |
|
| |||| |
|
|
| T |
35798734 |
actcca |
35798739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 35755055 - 35755146
Alignment:
| Q |
32 |
ttcttatatgatataatatcacatatataataccta----gataacaaaacttatatcctcagctacttttacaaaactggccctttagcag |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | | |||||||||||||||||||| ||||||| ||||||| |||| || ||||| |
|
|
| T |
35755055 |
ttcttatatgatgtaatatcacatatataacaccaaccaagttaacaaaacttatatcctcaactactttcacaaaacaggcctttcagcag |
35755146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University